AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00199 ATGTCACCAGTAATCATATACCCAATTCTTATATTATCCCTACTTATTATTCCCCCAAACCCAACCGCCGCCGCCGATCGATCATCCATCTCAGTCCTCATAACCCAAAGCGGCCTTGATTTCGTCAAGAATTTGCTTGTAACCAAAGCTATTTCTAAAATTGTTCCAACCCCAATTTCTGGAATTGACAAGGCTGTTGAAATTCCTCTAATTGGTAAAGTTCATATTGTTCTTTCGAACATTACTATTTACCGGTTCGATGTCGGGTTGTCGCAGGTTATACCCAATGCCGCAGGTGTCTCTGTTGCTGGGTCAGATGTTACTTGTGATTTGAATGTGAAATGGCATTATGCTTATGGTTCTTCCCTTTTTCCTATTTCGGTTTCGGATACTGGGACTGCTTCTGTTCAGGTTAATGGCCTGGAAATGGGGGCGGCGTTGGGCTTGAATGTTACAGAAGGATCTATGAAACTTTCCACCATTGAATGCAATTCTCATATAGATGATATTTCCATAGACCTAGATGGAGGTTCATCTTGGCTCTATCAAGGGATTCTGGATGCTTTCAAAGAAGAAATAGTGTCAACAGTAGAAAAAACAATCACCAAAACACTAAAAACCGAGATTTCAAAGCTTGGATCTATTCTACAAAGTCTTCCGAAACAAATTCCAGTCGATGACGTGGCATCATTAAACGTTACACTTGTTAACAACCCTTTTCTAAGTGACACTTCATTAGGGTTTGAGATAAACGGGTTATTCATAGAAAATAAACCCGGCACACATTCTTACAGAAACAGTTTGCAGCCACCTGTCCATTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTGTTCAAATCTGCATTTTCCTTATATTACAATGCTATGTTTATGCATTGGACTGTGGATAAACTTCCTGAACAATCTCTTTTGAACACAGCAGGGTGGAGATTTATTATTCCTCAACTCTACAAAAAATACCCAAATGATGATATGAGTTTAAATCTCTCTTTATCTGATCCACCAGTTGTGCAGATATCACAGCAGAAAATTGATGCTACTATTTATGCAGATTTTATTATAGATGTTCTTGAAGGGGTTGACACAGTACCTGTTGCTTGTATCTCATTGGTCATTTCTAGCTCGGGTTCAGTTCAAATTACCGGAAATAACCTTACGGCTCATTTGAAAATGGATGATTTATCCATGTCATTGAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTAATTCAGCCGGTGGTGTGGACGATGATTGAAACTGTTTTCGTACCATATGTGAATGCACGAATTGGGGTTGGGTTCCCCTTGCCTCTAATTAACGGGTTTATGCTTCGAAATGCTGAAATAATAACCTCGGATTCGAGAATCACTGTTTGCGGTGATGTTACGTACGAGGAATCGTTTGGTGGGACACAAATCTACGATTCGTAG 1470 39.8 MSPVIIYPILILSLLIIPPNPTAAADRSSISVLITQSGLDFVKNLLVTKAISKIVPTPISGIDKAVEIPLIGKVHIVLSNITIYRFDVGLSQVIPNAAGVSVAGSDVTCDLNVKWHYAYGSSLFPISVSDTGTASVQVNGLEMGAALGLNVTEGSMKLSTIECNSHIDDISIDLDGGSSWLYQGILDAFKEEIVSTVEKTITKTLKTEISKLGSILQSLPKQIPVDDVASLNVTLVNNPFLSDTSLGFEINGLFIENKPGTHSYRNSLQPPVHCSDPSKMIGIALDEAVFKSAFSLYYNAMFMHWTVDKLPEQSLLNTAGWRFIIPQLYKKYPNDDMSLNLSLSDPPVVQISQQKIDATIYADFIIDVLEGVDTVPVACISLVISSSGSVQITGNNLTAHLKMDDLSMSLKWSKIGTLHMFLIQPVVWTMIETVFVPYVNARIGVGFPLPLINGFMLRNAEIITSDSRITVCGDVTYEESFGGTQIYDS 489
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00199 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 30 242 IPR017943 GO:0008289(InterPro)
Dapi7g00199 489 PIRSF Lipid-binding-protein 8 482 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Dapi7g00199 489 SMART bpi2-2 275 473 IPR001124 GO:0008289(InterPro)
Dapi7g00199 489 PANTHER OS06G0309200 PROTEIN 10 480 IPR045897 -
Dapi7g00199 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 246 477 IPR017943 GO:0008289(InterPro)
Dapi7g00199 489 Gene3D - 31 464 - -
Dapi7g00199 489 Pfam LBP - BPI - CETP family, C-terminal domain 260 477 IPR001124 GO:0008289(InterPro)
Dapi7g00199 489 SMART bpi1-3 34 259 IPR017942 GO:0008289(InterPro)
Dapi7g00199 489 Gene3D - 37 217 - -
Dapi7g00199 489 Pfam LBP - BPI - CETP family, N-terminal domain 38 211 IPR017942 GO:0008289(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00199 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251589 Dapi7g00199 Dapi23g00220
386982 Dapi23g00220 Dapi7g00199
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr24:19194769 Dapi7g00199 Dapi-Chr7:4179929 dispersed
Dapi Dapi-Chr7:4179929 Dapi8g01105 Dapi-Chr8:23653563 dispersed
Dapi Dapi-Chr23:4731818 Dapi7g00199 Dapi-Chr7:4179929 wgd