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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00231 ATGAACAGATTAGTTTTCAAAAGGATATATACAGGTGTTAGAAGGGAGATTTCACAATCATCAATCTGTGAAACAGTCTTTAATTCATTTGAGAGAAACTGTTCTTCTTTCGTTTCGTCGTCTTCGACTGGTATATCAGAAGGATCTCTAAGGTATAAAGCTAGAAGCGCGTTCCAAACAAGATCCGCAAAAAATATGGCAATGAACACGGAAAATGCATCGAAAGATTTAGTAAATGAAGTTGATCATGTTTATATGCTTGATGCTTCTTTTGATTCTTTTGGAGGGGTTATTATAAACGTTAAAGATAGCATAGATGAAAATGTCTTTACCACTTTACTTCAAACATCAATATCCCAATGGAGGCAGCAGGGAAAGAAGGGAGTGTGGCTTAAACTGTCTCTTGAACATTCAAATCTTGTTAACTCTGCAGTAAAGGGAGGATTTTGGTACCATCATGCTGAACCAACATATGTTATGCTTGTGTATTGGATCCCTGAAACTACGCATACTCTCCCACCGAATGCTTCACATCGAGTTGGTGTTGCTTCTTTTGTCGTAAACAGTAAAGGGGAGATTCTTGTCGTTCAAGAGAAAAGCGGAGCGTTTAAAGGAACAGGGGTCTGGAAATTACCAACGGGTACTGTTGAGGAGGGAGAAGATATAAGTGCAGCCGCCATCAGAGAAGTGAAAGAAGAGGCTGGAATAGATACAGAATTCATGGAAGTCCTTGCATTCAGGCAAAGTCACCAATCATTTTTTAGCAAGTCAGATCTTATGTTTGTGTGTATGTTAAAACCAACATCATTTGACATCCAAAAGCAAGACTCTGAGATTGAAGCAGCACAGTGGATACCAATTGAAGAATATGCCAACCAACCCTTTATAAAAAAGCACAAATCTTTTGACTACATTGCTCAAATATGCATAGCAAAAAAAGATAACAAATATGTTGGATTTACTCCATTGCTCACAACAAGTGCCACATCAGCCAAACAGACCTATTTGTATTCCAATTATCAATTGGAGCAGTAA 1035 38.07 MNRLVFKRIYTGVRREISQSSICETVFNSFERNCSSFVSSSSTGISEGSLRYKARSAFQTRSAKNMAMNTENASKDLVNEVDHVYMLDASFDSFGGVIINVKDSIDENVFTTLLQTSISQWRQQGKKGVWLKLSLEHSNLVNSAVKGGFWYHHAEPTYVMLVYWIPETTHTLPPNASHRVGVASFVVNSKGEILVVQEKSGAFKGTGVWKLPTGTVEEGEDISAAAIREVKEEAGIDTEFMEVLAFRQSHQSFFSKSDLMFVCMLKPTSFDIQKQDSEIEAAQWIPIEEYANQPFIKKHKSFDYIAQICIAKKDNKYVGFTPLLTTSATSAKQTYLYSNYQLEQ 344
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00231 344 PANTHER NUDIX HYDROLASE RELATED 60 341 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Dapi7g00231 344 Pfam NUDIX domain 178 299 IPR000086 -
Dapi7g00231 344 SUPERFAMILY Nudix 147 307 IPR015797 -
Dapi7g00231 344 FunFam Nudix hydrolase 8 179 317 - -
Dapi7g00231 344 CDD Nudix-Hydrolase-12 178 309 - -
Dapi7g00231 344 FunFam nudix hydrolase 2 84 170 - -
Dapi7g00231 344 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 137 155 IPR003293 -
Dapi7g00231 344 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 263 287 IPR003293 -
Dapi7g00231 344 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 175 193 IPR003293 -
Dapi7g00231 344 PRINTS NUDIX hydrolase family signature 209 223 IPR020476 -
Dapi7g00231 344 PRINTS NUDIX hydrolase family signature 223 238 IPR020476 -
Dapi7g00231 344 ProSiteProfiles Nudix hydrolase domain profile. 177 309 IPR000086 -
Dapi7g00231 344 Gene3D - 83 169 - -
Dapi7g00231 344 Pfam Nudix hydrolase domain 88 165 IPR040618 -
Dapi7g00231 344 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 179 316 - -
Dapi7g00231 344 ProSitePatterns Nudix box signature. 214 235 IPR020084 GO:0016787(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00231 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251608 Dapi7g00231 Dapi23g00251
387001 Dapi23g00251 Dapi7g00231
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr26:20457551 Dapi7g00231 Dapi-Chr7:4674184 dispersed
Dapi Dapi-Chr2:133368431 Dapi7g00231 Dapi-Chr7:4674184 dispersed
Dapi Dapi-Chr7:4674184 Dapi9g00204 Dapi-Chr9:4084824 dispersed
Dapi Dapi-Chr23:5212791 Dapi7g00231 Dapi-Chr7:4674184 wgd