AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00237 ATGGCGGAAGCTTCCAGAATCTTCCACACCACACTACTGCCTACATTATACCAAACCTCATCTCTCAGAAAACGTTCATCTCAAACTATATCCCTACGAAGAACCTCACCGGCGACCGTTCGCTGCACGATCTCCACTAGCAGCAGTGACACATCTAGGGCTTACGTGGCTCCTCAGCCGATACCGTGGGGCTGCGAAATCGATTCTGTCGAGAACGCAGCTGCGTTGCAGAAATGGTTGACGGATTCCGGTTTGCCGCCTCAGAAAATGGATATACAGAAGGTTGATGTTGGAGAGAGAGGTCTCGTTGCCAATAATAATATTAGGAAGGGAGAGAAATTGCTATTTGTACCTCCGTCGCTTGTTATTTCGGCAGATTCGGAGTGGAGTTTTCCAGAAGCTGGGGAAGTTTTGAAGAGATATAATGTACCCGATTGGCCATTAATTGCAACCTACCTAATTAGTGAAGCAAGCCTTATGAAGTCATCTAGATGGAGCAGTTATATATCAGCCTTACCAACACAGCCTTACTCACTTTTATACTGGACGCGTGCAGAATTAGATCAGTACTTGGAAGCATCCCAGATTAGGGAACGCGCAATCGAAAGGATCAATAATGTAACCGGAACATACAATGACTTGAGAGCAAGAATTTTCTCCAAGCACCCTAATTTATTTCCTGAAGAGATATTTAATATGGAAACATTTAAATGGTCATTTGGCATTCTTTTTTCGCGTTTGGTTCGGTTACCCTCATTGGATGGAAGGGTTGCCTTAGTCCCTTGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACCTTTTTGGATTATGATAAATCGACAAAAGGAGTTGTATTTACAACCGACCGCCCTTACCTGCCAGGTGAGCAGGTGTTTATTTCATACGGCAGGAAATCTAATGGAGAACTGTTGCTTTCTTATGGGTTTGTGCCAAGGCAAGGGACAAACCCGCGTGACTCAGTTGAGTTGCCAATGATGCTTAAAAAATCAGATAAATGCTATGAACAGAAGGTGGAAGCTTTGAAGAAGCATGGGTTGTCAGCATCACAATGTTTTCCTTTACAAGTTACGGGTTGGCCATTGGAGCTAATAGCATATGCGTATTTAGCTGTCAGTCCCCCTAGTATGAGTGGAAAGTTTGAAGAGATGGCTTCCGCAGCATCAAATAAAAACACCAGCAAAAAGGAAATCAGGTATCCTGAATTAGAGGATCAGGCATTGCAGTTTATCTTGGATAGCTGTGAATCCAGCATATCAAAGTATACCAAGTTCCTTCAGGCAAGTGGGTCAATGGATTTGGATATAACATCTCCAAAGCAGTTGAACCGTAAAGTATTCCTCAAACAGTTAGCTGTGGACTTGTGCAATAGTGAACAGCGAATTCTATTTCGTGCCCAATACATATTGAGGAGAAAGTTAAGGGATATGAGGAGAGGTGAACTGAAGGCCCTAAAATTGTTTGATAGTGTCACAAAGTTCTTCAAATAA 1512 42.99 MAEASRIFHTTLLPTLYQTSSLRKRSSQTISLRRTSPATVRCTISTSSSDTSRAYVAPQPIPWGCEIDSVENAAALQKWLTDSGLPPQKMDIQKVDVGERGLVANNNIRKGEKLLFVPPSLVISADSEWSFPEAGEVLKRYNVPDWPLIATYLISEASLMKSSRWSSYISALPTQPYSLLYWTRAELDQYLEASQIRERAIERINNVTGTYNDLRARIFSKHPNLFPEEIFNMETFKWSFGILFSRLVRLPSLDGRVALVPWADMLNHSCDVETFLDYDKSTKGVVFTTDRPYLPGEQVFISYGRKSNGELLLSYGFVPRQGTNPRDSVELPMMLKKSDKCYEQKVEALKKHGLSASQCFPLQVTGWPLELIAYAYLAVSPPSMSGKFEEMASAASNKNTSKKEIRYPELEDQALQFILDSCESSISKYTKFLQASGSMDLDITSPKQLNRKVFLKQLAVDLCNSEQRILFRAQYILRRKLRDMRRGELKALKLFDSVTKFFK 503
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00237 503 Pfam SET domain 100 304 IPR001214 GO:0005515(InterPro)
Dapi7g00237 503 CDD SET-RBCMT 87 318 IPR044431 GO:0016279(InterPro)|GO:0018022(InterPro)
Dapi7g00237 503 FunFam Ribulose-1,5 bisphosphate carboxylase-oxygenase large subunit N-methyltransferase, chloroplastic 57 317 - -
Dapi7g00237 503 Pfam Rubisco LSMT substrate-binding 337 470 IPR015353 -
Dapi7g00237 503 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 502 IPR036464 -
Dapi7g00237 503 SMART set-7 88 310 IPR001214 GO:0005515(InterPro)
Dapi7g00237 503 SUPERFAMILY SET domain 72 320 IPR046341 -
Dapi7g00237 503 ProSiteProfiles SET domain profile. 88 304 IPR001214 GO:0005515(InterPro)
Dapi7g00237 503 Coils Coil 197 217 - -
Dapi7g00237 503 Gene3D - 322 492 IPR036464 -
Dapi7g00237 503 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 73 478 IPR050600 GO:0016279(PANTHER)|GO:0018026(PANTHER)
Dapi7g00237 503 Gene3D set domain protein methyltransferase, domain 1 46 317 - -
Dapi7g00237 503 FunFam Rubisco methyltransferase family protein 323 486 - -
Dapi7g00237 503 PIRSF RMT-SET 1 500 IPR011192 GO:0009507(InterPro)|GO:0030785(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00237 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251613 Dapi7g00237 Dapi23g00257
387006 Dapi23g00257 Dapi7g00237
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr3:20452522 Dapi7g00237 Dapi-Chr7:4730496 dispersed
Dapi Dapi-Chr23:5292737 Dapi7g00237 Dapi-Chr7:4730496 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi SET 1.7e-16 No_clan TR SET