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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00271 ATGAGTTTCGGAGACGGCAGCCATGGTGCTCTTGGCTTACCTACCTCCGTCATCGGAATCGGTTCCGACACATACGAACCAACTCCAATCTCAACCCTACCTCCCGACGTCTCCGCCGTCGCCGCCGGTCACTACCACTCCCTCGCCGTTACTTCTGACGGCGGCCACCTCTGGTCATGGGGCCGCAATGTGGAATATCAGCTTGGCCGTGCAATTGATTCCCCTAGGGAAATATGGGTCAACCCGGGGAGAATAAACGGGGTTGATGGGTCGTTATGGATTTGGGGGAAATCAAAGCGTGGTCAATTAGGGCTTGGAATTGGGATTACAGAGGCTGTTGTTCCTTCTAGGGTTAAAGTTCTTGATAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGGCATGCTCTTGCACTTACCAAAGATGGAAGGTTATTTGGTTGGGGATATTCAGCAGATGGTAGATTAGGAAAGAGAAAAATTATGGGGATTTCACATCTTGATTCAAAGGCTAACTTGTCTTCAAGTTTGAATCTTGAAGATGCTGAGAAAGTGGTCTTGGAAGCTATGGACAAGGAGAATGATATGCCCATAATCTGGGAACCCTGCTTAATCGATGAGCTAAAAGGTGTTGAAGTTGCTGATGTGTCATGTGGGCTCGATCATACCCTGGTTCTTCTACGTGATGGAACCTTACTCAGTGGTGGAAGCAATGCATATGGTCAACTGGGTAGGTCAACACAAGGTATGGAGTTTCTTCCTGTTGACATAAGCGTCTACCCTGTCTCCGTTGCGTCCGGGCTGGGCCATTCGTTAGCAATATGCAGAATCCCATCAGCAGATGGCGGTGGTGCCATTTCAGGCATCTTTTCATGGGGTTGGGGTCGGGATTCTCAGCTCGGGAGGGTGGGGCCCGCCAACATCCCATTGCCCGTGGATGGGATTTTAGGGGAAAGCCCATTGTCAGTTTCAGGTGGGCGTGTGCATTCCATCGCTGTCATGACGAATGGAGAGGCTTTTACTTGGGGGTGTGGTAGGAACGGAAGGCTCGGGTTGGGTAGCTCTGCAGACGAGCCCGAACCCATGTTGGTTGAGTTTTCAGAAGGTACTAATGTTTTACAAGCAGTTGCAGGGTTTGATCATACTCTAGTCCTAACCAGCAACTAA 1167 49.7 MSFGDGSHGALGLPTSVIGIGSDTYEPTPISTLPPDVSAVAAGHYHSLAVTSDGGHLWSWGRNVEYQLGRAIDSPREIWVNPGRINGVDGSLWIWGKSKRGQLGLGIGITEAVVPSRVKVLDKEEIIKVSFGWGHALALTKDGRLFGWGYSADGRLGKRKIMGISHLDSKANLSSSLNLEDAEKVVLEAMDKENDMPIIWEPCLIDELKGVEVADVSCGLDHTLVLLRDGTLLSGGSNAYGQLGRSTQGMEFLPVDISVYPVSVASGLGHSLAICRIPSADGGGAISGIFSWGWGRDSQLGRVGPANIPLPVDGILGESPLSVSGGRVHSIAVMTNGEAFTWGCGRNGRLGLGSSADEPEPMLVEFSEGTNVLQAVAGFDHTLVLTSN 388
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00271 388 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 40 50 IPR000408 -
Dapi7g00271 388 Pfam Regulator of chromosome condensation (RCC1) repeat 89 139 IPR000408 -
Dapi7g00271 388 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Dapi7g00271 388 Pfam Regulator of chromosome condensation (RCC1) repeat 289 333 IPR000408 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 143 229 IPR000408 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 336 IPR000408 -
Dapi7g00271 388 Gene3D - 1 86 IPR009091 -
Dapi7g00271 388 Gene3D - 283 388 IPR009091 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1 53 IPR000408 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 277 IPR000408 -
Dapi7g00271 388 SUPERFAMILY RCC1-BLIP-II 2 387 IPR009091 -
Dapi7g00271 388 Gene3D - 87 282 IPR009091 -
Dapi7g00271 388 PRINTS Chromosome condensation regulator RCC1 signature 126 139 IPR000408 -
Dapi7g00271 388 PRINTS Chromosome condensation regulator RCC1 signature 91 107 IPR000408 -
Dapi7g00271 388 PRINTS Chromosome condensation regulator RCC1 signature 378 388 IPR000408 -
Dapi7g00271 388 PRINTS Chromosome condensation regulator RCC1 signature 289 303 IPR000408 -
Dapi7g00271 388 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Dapi7g00271 388 Pfam Regulator of chromosome condensation (RCC1) repeat 213 242 - -
Dapi7g00271 388 Pfam Regulator of chromosome condensation (RCC1) repeat 37 67 - -
Dapi7g00271 388 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 216 226 IPR000408 -
Dapi7g00271 388 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 70 IPR051210 -
Dapi7g00271 388 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 90 142 IPR000408 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00271 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251629 Dapi7g00271 Dapi23g00297
387022 Dapi23g00297 Dapi7g00271
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:6136500 Dapi7g00271 Dapi-Chr7:5523574 wgd