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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00273 ATGGCCGAAAAGAATGAAAAGACCGGACCATGTCAAGAAGAAGAAGTAAGATCCGGCATCCGGACCGCGGAGATGCTGCTGAGACTTCTTCCGGTGGGGCTGTGTGTGACGGCCTTAGTCGTTATGATTAAGGATTCGGAGGATAATGATTATGGCTCTTTATCCTACTCCAACATCACTGCTTTCAGGTTTTTGGTGCATGCCAATGGCATATTGGCTGGTTATTCACTACTGTCAGCTGCTTTCACAGCAGTGCCTCGCCCTATGACGATGCCTCGAGCCTGGACCTTCTTTTTCCTTGACCAGGTTTCAACATACTTGATATTGGCTGCGGGTGCGGCGACGACAGAGGTGGTGTTTCTGACATACAAAGGTGACGTGGCAGTGACGTGGAGCGAAGTGTGTGGGACCTACGGCCACTTTTGTAAACAAGCAACAACTTCAATCACCATCACTTTTCTGGTTGTGATTTGCTACATGTTATTGTCAATAATCTCATCGTATAGGCTCTTTAGCAAGTACGATGCACCTGTCGGGTACCATAACAAGGGAATCGAGATCGTTGACTTGGGGAGTTAA 579 47.84 MAEKNEKTGPCQEEEVRSGIRTAEMLLRLLPVGLCVTALVVMIKDSEDNDYGSLSYSNITAFRFLVHANGILAGYSLLSAAFTAVPRPMTMPRAWTFFFLDQVSTYLILAAGAATTEVVFLTYKGDVAVTWSEVCGTYGHFCKQATTSITITFLVVICYMLLSIISSYRLFSKYDAPVGYHNKGIEIVDLGS 192
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00273 192 Pfam Casparian strip membrane protein domain 18 158 IPR006702 -
Dapi7g00273 192 NCBIfam plant integral membrane protein TIGR01569 26 169 IPR006459 -
Dapi7g00273 192 PANTHER CASP-LIKE PROTEIN 4A4 15 172 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00273 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251631 Dapi7g00273 Dapi23g00299
381642 Dapi16g01870 Dapi7g00273
387024 Dapi23g00299 Dapi7g00273
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr7:5530016 Dapi9g00271 Dapi-Chr9:5007158 dispersed
Dapi Dapi-Chr16:69825843 Dapi7g00273 Dapi-Chr7:5530016 wgd
Dapi Dapi-Chr23:6145286 Dapi7g00273 Dapi-Chr7:5530016 wgd
Dapi Dapi-Chr32:79902011 Dapi7g00273 Dapi-Chr7:5530016 wgd