AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00278 ATGGCGGTGATTAAACGAAGAAAATCGGATGAGAGCAATAATGGCGGTGGCGGTGGCGGTGATCGGAACATGAAGAACGATAATAATTGGAAGAGATGGGGATTTGTTGCATCTGTGATTGTAGTTTTAGTTGCGGTGTATCTAAATCCATGGCGGCAGTTTCTCGATTATTCACTCCTCCGTAAAACCTATATTTGTTCTAAGGATACTTGTGAACATACAGGGGTAATTGATGAATGCTGTTGTGATTATGAGAGCATTGATGATATTAATGGAGCAATTCTATATCCATTGTTACAAGAGCTTGTTAAGACTGCTTTCTTTAGATATTTCAAGGTTAAGTTATGGTGTGATTGCCCATTCTGGCCTGATGATAGCATGTGTCGCCTGCGTGACTGCAGTGTATGCGAGTGTCCAGAACATGAATTCCCGGAATTGTTTAAAAAGCCATCAGTGCATGTTCTTCCAAAAGATGACCCTGGTTGTCAAGAGGGGAAACCTGAGGCTACTGTTGACCGTACCCTAGATGATAAATCATTTAGAGGTTGGGTGGAAGTTGATAATCCATGGACTCATGAAGATGAAACTGATAGTGGTGAGATGACGTATGTTAATCTGCAACTGAACGCTGAACGTCATACAGGTTATACAGGGCCATCAGCAAGAAGAATATGGGATGCTATATACTCAGAATATTGTCCAAGATATGCATATGGAGAGACTTGCCCAGAGAAGAAAGTACTATACAAACTAATATCTGGTCTACACTCCTCAATTTCAAGCCATATAGCTGCTGATTATCTCCTTGATGAGGCTACCAATAAGTGGGGTACAAATCTTGGATTGATGCGCGATCGTGTCATGAAACATTCTGATCGCGTGGAAAATCTGTACTTCGCTTTCCTATTTGTTCTTAGAGCTGTGACAAAAGCAGCTACTTATTTGGATCAAGCTGAGTATGAGTCTGGTAATCATGTGGAGGATTTGAGAGCTCAATTCTTGATTCGGAAACTGGTACACGATTCTAAATTGCAAGATGCATGTGCTCTTCCATTTGACGAGGCTGAACTGTGGCAAGGTCAAGGTGGGCCCATACTCAGGCAGCAGATTCAAAATCAATTTCGAAACATCAGTGCGCTCATGGACTGTGTAGGGTGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAAGTTCTTGGGCTTGGAACTTCATTACAAATTCTCTTCTCTGTTGACGACAAGGGAAAGCCGGACCCACACCTGCAGTTACAAAGACATGAAGTGATTGCTCTAATTAATCTACTAAATCGGCTATCGGAATCTCTTATATTTGTTACTAAAACGAGAGGTCGGGTTGCTATAAACCCTCTGGCTGAAGAAATCGGTATAATTTGCATACAATGGGGATCATCAATAGCCCAATGGTGGAAGAAGCTGTCAAAATCTATCTAA 1449 41.75 MAVIKRRKSDESNNGGGGGGDRNMKNDNNWKRWGFVASVIVVLVAVYLNPWRQFLDYSLLRKTYICSKDTCEHTGVIDECCCDYESIDDINGAILYPLLQELVKTAFFRYFKVKLWCDCPFWPDDSMCRLRDCSVCECPEHEFPELFKKPSVHVLPKDDPGCQEGKPEATVDRTLDDKSFRGWVEVDNPWTHEDETDSGEMTYVNLQLNAERHTGYTGPSARRIWDAIYSEYCPRYAYGETCPEKKVLYKLISGLHSSISSHIAADYLLDEATNKWGTNLGLMRDRVMKHSDRVENLYFAFLFVLRAVTKAATYLDQAEYESGNHVEDLRAQFLIRKLVHDSKLQDACALPFDEAELWQGQGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTSLQILFSVDDKGKPDPHLQLQRHEVIALINLLNRLSESLIFVTKTRGRVAINPLAEEIGIICIQWGSSIAQWWKKLSKSI 482
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00278 482 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 95 441 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Dapi7g00278 482 PANTHER ERO1-RELATED 39 448 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(PANTHER)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
Dapi7g00278 482 SUPERFAMILY ERO1-like 82 449 IPR037192 -
Dapi7g00278 482 MobiDBLite consensus disorder prediction 1 25 - -
Dapi7g00278 482 PIRSF ERO 34 481 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00278 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
75971 Dapi17g01142 Dapi7g00278
251636 Dapi7g00278 Dapi23g00304
387029 Dapi23g00304 Dapi7g00278
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr17:46510765 Dapi7g00278 Dapi-Chr7:5561300 wgd
Dapi Dapi-Chr23:6175484 Dapi7g00278 Dapi-Chr7:5561300 wgd