AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00288 ATGGGGAACAAGCTCGCTCGGAGAAGACAATTGGTTGACGAAAAGTATACACGGCCTCAAGGATTGTATCAGCACAAAGATGTAGATCATAAGAAGCTTCGGAAGCTTATACTTGATTCGAAGCTTGCTCCGTGTTATCCTGGTGACGATGATTGCAATTGTGATCTGGAAGAGTGTCCTATTTGCTTTCTGTATTATCCGAGTCTTAATAGGTCAAGATGTTGCACTAAGGGGATTTGTACAGAGTGTTTTTTGCAGATGAAGACGCCGAATTCTACGCGTCCTACGCAATGTCCGTTTTGTAAAACGTTGAACTATGCGGTCGAGTATAGAGGCGTGAAGACGAAGGAGGAGAAGGGGCAGGAGCAAATTGAAGAACAGAGAGTGATAGAAGCGAAGATAAGAATGAGACGACAAGAAATTCAAGATGAAGAGGAAAGAATGCTGAAAAGGCAAGAGACGGGTTGTTCAAACAGGGTCGTTGAACCAAGGGAGGCTGAATATTTCTCCGGAGCAGCATCTTCTTTTGAAGGTGAGGAAATAGTTTCTGCCCCAAATCCTGCAACAGCCAGACATCCTCCACGCTATAGGGAGAACAGAGATGATGAATTTGATCTTGATCCTGAAAATATAATGCTAATGGAAGCCATCTGGTTGTCTTTTCAGGAGGATAAGAAGCAAAAAAATGATAACTCTAATTACGGTGATGCCACCCAATTAGCAAAATACGCAACAGAAGTTCGTCTTTTAGCATCAATGGCCCCACAAGCTGAATATACAGCTTCATCCTCATCACCTTCTGGTGGACTTGCATGCGCCATAGCCGCTCTCGCTGAACGCCAGCAAACGGGAGGTGAATCGTCAACTAATTACAACAATTATAGTGGGAGTTTATCAACATACAACGTGCATCCCAACCATAGTAGCCAAACAGGGTTATTATCACTTGATAACCATCTGCAAATTAATCATGATAATAGTTCAGAAGAATTGGGAGAAACTGGATATGGGTATGATGGTAATAATGTAAGCAGAGGGCAATATGGTCCACTTGATGAGGTGGAAAATGTTGGTGGGAGTATAGTTCCTGAGAGCTTTGAAGAGCAGATGATGCTAGCCATGGCGGTTTCATTGGCCGAGGCTCGAGCTAGGACTAGCAGTAGTACTACACCAGAGGTCGCGTGGATTTAG 1191 43.74 MGNKLARRRQLVDEKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCNCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRRQEIQDEEERMLKRQETGCSNRVVEPREAEYFSGAASSFEGEEIVSAPNPATARHPPRYRENRDDEFDLDPENIMLMEAIWLSFQEDKKQKNDNSNYGDATQLAKYATEVRLLASMAPQAEYTASSSSPSGGLACAIAALAERQQTGGESSTNYNNYSGSLSTYNVHPNHSSQTGLLSLDNHLQINHDNSSEELGETGYGYDGNNVSRGQYGPLDEVENVGGSIVPESFEEQMMLAMAVSLAEARARTSSSTTPEVAWI 396
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00288 396 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Dapi7g00288 396 PANTHER PROTEIN SIP5 1 314 IPR039301 GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00288 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
76519 Dapi18g00760 Dapi7g00288
81302 Dapi2g00768 Dapi7g00288
251642 Dapi7g00288 Dapi23g00316
381629 Dapi16g01860 Dapi7g00288
387035 Dapi23g00316 Dapi7g00288
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr24:7537344 Dapi7g00288 Dapi-Chr7:5859575 dispersed
Dapi Dapi-Chr2:16879528 Dapi7g00288 Dapi-Chr7:5859575 dispersed
Dapi Dapi-Chr16:68939936 Dapi7g00288 Dapi-Chr7:5859575 wgd
Dapi Dapi-Chr23:6491906 Dapi7g00288 Dapi-Chr7:5859575 wgd
Dapi Dapi-Chr32:78804019 Dapi7g00288 Dapi-Chr7:5859575 wgd