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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00289 ATGGCGATAATTGAAATGCGAGTTCATGTAGATTGCCCCGGTTGTGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGGGTGGAGAACGTAGATATAGACATGGGTTTACAGAAGGTGACGGTCACCGGAATCGCCGACGAGAAGAAAGTGCTGAAAACGGTCAGAAAAAGCGGCCGACGAGCTGAGATATGGAACATACCCTACAACCCGGATATCCGTACACATAACTACAACGTTAATCAATATGCTCAACAGCAACAACAAAATGGTGCTTCGGGCTCAGCTCCCCCGGCGACATTCTACACCCGAAAGCCATTTTCTGCCTCATCGTACAACTACTACAAACACGGTTATGATGACCACCATCTTTACAATCCGGTCCAGTCCTCAGGCTTAATCGGACACCAGACTGGTGCTGCGTTTAGCGATGAAAATACCCATGCTACCTGTGAAATTATGTAG 468 47.01 MAIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADEKKVLKTVRKSGRRAEIWNIPYNPDIRTHNYNVNQYAQQQQQNGASGSAPPATFYTRKPFSASSYNYYKHGYDDHHLYNPVQSSGLIGHQTGAAFSDENTHATCEIM 155
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00289 155 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Dapi7g00289 155 SUPERFAMILY HMA, heavy metal-associated domain 3 67 IPR036163 GO:0046872(InterPro)
Dapi7g00289 155 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
Dapi7g00289 155 Pfam Heavy-metal-associated domain 7 61 IPR006121 GO:0046872(InterPro)
Dapi7g00289 155 Gene3D - 2 65 - -
Dapi7g00289 155 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 155 IPR045181 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00289 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251643 Dapi7g00289 Dapi23g00317
387036 Dapi23g00317 Dapi7g00289
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr5:109917835 Dapi7g00289 Dapi-Chr7:5863563 dispersed
Dapi Dapi-Chr6:51077649 Dapi7g00289 Dapi-Chr7:5863563 dispersed
Dapi Dapi-Chr7:5863563 Dapi8g00351 Dapi-Chr8:6539719 dispersed
Dapi Dapi-Chr23:6495947 Dapi7g00289 Dapi-Chr7:5863563 wgd