AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00295 ATGTCCTCTTCACTTGTTCCACTCACCTCCACATTCGCTTCCACCAACACCCAACGAGCCTTCAAGACTCGAACCAAGCAAGCCCAAGGGCTTAGAGTCTCATGCAACAGTGCGCCAGATAATAATCATAATGACAAGAAACTCATACTCCCCAATGTAGACCGGAGGAACCTGCTGGTGGGACTTGGCGGTCTCTACACCGCAGCCAACCTGCCAGGGGCAATCGCGGCTCCCATTACCGCTCCCGATATCACGTCCATATGCAAGGAAGCCAATTCAGGCATTAGCAACCCTGATGCCGCTATCAGGACAAGAAAATGCTGCCCTCCTGACCTTGGGAAGCCGGTTATAGATTTTGTTTTTCCCACAGAAAAGACGGTGAGGAAAAGATGGCCGGCGCATAAGGGGACACAGAAGCAGATGGACGATTATAGAAGAGCCATCGCAGCCATGAGAGCTCTCAAAGATGATGACCCGCACAGCTTCGTCAGCCAAGCTAAAATCCATTGTGCTTACTGCAACGGAGGTTACACTCAAGTCGCTAGCGGTTTCCCTGAAATCGATATTCAGATTCACAACTCATGGCTCTTCTTTCCTTTCCACCGCTGGTACCTTTACTTCTACGAGAGAATACTCGGAAAGTTGATTGACGAGCCCGATTTCGCCCTACCTTTCTGGAAATGGGACGAACCAGCTGGAATGCCGATTCCAGATATCTTTTTGCCCGGTGCACCAAACCCCCTGTATGACCAATACAGGGATCCCAATCATGTCCAGGATAGATTGGTGGATCTGGACTACGATGGTAAAGATAAGGACATTCCAGATCAGCAACAGATACTCTGCAATCTGAGTACAGTCTACCGAGACTTGGTCAGAAACGGAGGTGACACACTAAGCTTCTTCGGGGGCAAATACGTAGCTGGAGATCAACCTGTAGCCAATGGTGCGAAGTCAGTGGGATCCGTGGAAGCCGGTTCTCACACCGCGGTACACAGATGGGTAGGTGACCCAAACCAACCTAACAACGAGGACATGGGTAACTTCTACTCCGCAGGGTATGATCCTATATTCTACATCCACCATGCAAATGTGGACCGTATGTGGAAGCTATGGAAGGATCTGAAACTTCCGGGGCATGTAGATCCAACCGACTCAGACTGGTTAGACGCCTCATTTGTGTTCTATGATGAGAACAAGAATCTTGTGCGTGTCTACAACAGAGACTCCGTCAACCTAGACAAACTCAACTACAAGTACATTGAGAACTCCAAGGAAGTGTTCCCATGGCGCAACAGTCGACCCGCTCGACGTAGAAAGAGCTCCCAGGTTGCTTCGACTACAGGAGACGTGAAAACGGTGGACAAAACCAAGTTCCCGGTGAAACTAGACAAAATATTCAAGGTGTAA 1410 49.43 MSSSLVPLTSTFASTNTQRAFKTRTKQAQGLRVSCNSAPDNNHNDKKLILPNVDRRNLLVGLGGLYTAANLPGAIAAPITAPDITSICKEANSGISNPDAAIRTRKCCPPDLGKPVIDFVFPTEKTVRKRWPAHKGTQKQMDDYRRAIAAMRALKDDDPHSFVSQAKIHCAYCNGGYTQVASGFPEIDIQIHNSWLFFPFHRWYLYFYERILGKLIDEPDFALPFWKWDEPAGMPIPDIFLPGAPNPLYDQYRDPNHVQDRLVDLDYDGKDKDIPDQQQILCNLSTVYRDLVRNGGDTLSFFGGKYVAGDQPVANGAKSVGSVEAGSHTAVHRWVGDPNQPNNEDMGNFYSAGYDPIFYIHHANVDRMWKLWKDLKLPGHVDPTDSDWLDASFVFYDENKNLVRVYNRDSVNLDKLNYKYIENSKEVFPWRNSRPARRRKSSQVASTTGDVKTVDKTKFPVKLDKIFKV 469
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00295 469 PRINTS Tyrosinase copper-binding domain signature 327 338 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 PRINTS Tyrosinase copper-binding domain signature 354 372 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 PRINTS Tyrosinase copper-binding domain signature 192 209 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 PRINTS Tyrosinase copper-binding domain signature 223 228 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 PANTHER TYROSINASE FAMILY MEMBER 53 445 IPR050316 -
Dapi7g00295 469 Pfam Polyphenol oxidase middle domain 382 435 IPR022739 GO:0004097(InterPro)
Dapi7g00295 469 Gene3D - 77 426 IPR008922 -
Dapi7g00295 469 Pfam Common central domain of tyrosinase 160 374 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 355 366 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 ProSitePatterns Tyrosinase CuA-binding region signature. 192 209 IPR002227 GO:0016491(InterPro)
Dapi7g00295 469 SUPERFAMILY Di-copper centre-containing domain 102 420 IPR008922 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00295 K00422 polyphenol oxidase [EC:1.10.3.1]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:6772055 Dapi7g00295 Dapi-Chr7:6075231 dispersed
Dapi Dapi-Chr23:6808002 Dapi7g00295 Dapi-Chr7:6075231 dispersed
Dapi Dapi-Chr7:6075231 Dapi7g00797 Dapi-Chr7:19335614 dispersed
Dapi Dapi-Chr7:6023311 Dapi7g00295 Dapi-Chr7:6075231 tandem
Dapi Dapi-Chr7:6075231 Dapi7g00296 Dapi-Chr7:6128074 tandem