AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00378 ATGGCTGCCAATTCAGTTAATATCGAAAATTTCGAAGAATCACAAGTTCATGTTTTTTCATCAGCGTCTGAGTTGATTGAGAAGTTGCATAATAAGTGGAATTCAGTTGAAAAGCTGCCATACCCAGCAATGTATTCCAGTATTTTTGGTGGGATTATTCTTGATCCTGCTATGATGGTCATCCCGATCGATGATCATATGGTGCATCGAGGACACGGTGTGTTTGATACTGCTATTATTCTTGATGGATACCTCTACGAGCTCGATGGTCATATCGATCGAATCCTTTTATCAGCATCGCTTGCGAAAATCTCACCGCCATTCCCCAAATCGACTATTCGATCAATTCTTATCCAGTTGACAGCAGCATCAAAATGCAAGAAAGGAACTTTAAGATATTGGTTAAGTGCAGGACCAGGGGATTTCTTACTTTCTCCTTCCGGGTGTCCAACATCCGCGTTCTACGCGGTTGTTATCGACGAAGAGTTCTCGCAGTGTAAAGAAGGTGTAAAAGTGATAACTTCCACAATACCCATGAAAGTTCCTTTATTTGCAACAAGCAAGAATGTGAATTACCTCCCAAATGTTCTATCGAAACTAGAAGCAGAAGAGAAAGGAGCATTTGCGTCAATTTGGGTCGATGATGACGGGTATGTGGCCGAGGGTCCGAACGTGAATGTGGGTTTCGTGACGCGTGAAAAAGAGCTTATTTTGCCTTTCTTTGACAAGATTTTAAGCGGGTGTACCGCGAAACGGCTTCTTGAATTGGCTCCAAAGTTGGTTGAAAATGGGAGTTTGAAGAGTGTGACAGTTGGGAATATTACAGTTGAGGATGCCAAACAGGCTGCTGAAATGATATTTATTGGAAGCACACTTCCTGTATTGCCAATTATTGAGTGGGATGAAAAGCCGATTGGCGACGGGAAAGTTGGGGAATTGACGATGGCGTTATCGGATTTGGTTTGGGAAGATATGGTGGCCGGTCCCGAGACACACAGGATCAAGGTTCCTTATGTGTAA 1020 43.04 MAANSVNIENFEESQVHVFSSASELIEKLHNKWNSVEKLPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDGHIDRILLSASLAKISPPFPKSTIRSILIQLTAASKCKKGTLRYWLSAGPGDFLLSPSGCPTSAFYAVVIDEEFSQCKEGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDDGYVAEGPNVNVGFVTREKELILPFFDKILSGCTAKRLLELAPKLVENGSLKSVTVGNITVEDAKQAAEMIFIGSTLPVLPIIEWDEKPIGDGKVGELTMALSDLVWEDMVAGPETHRIKVPYV 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00378 339 PANTHER AMINO-ACID AMINOTRANSFERASE 34 330 IPR050571 GO:0019752(PANTHER)
Dapi7g00378 339 FunFam D-alanine aminotransferase 161 328 - -
Dapi7g00378 339 CDD ADCL-like 65 321 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Dapi7g00378 339 FunFam D-amino-acid transaminase, chloroplastic 21 159 - -
Dapi7g00378 339 Pfam Amino-transferase class IV 73 300 IPR001544 GO:0003824(InterPro)
Dapi7g00378 339 Gene3D - 13 159 IPR043131 -
Dapi7g00378 339 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 49 326 IPR036038 GO:0003824(InterPro)
Dapi7g00378 339 Gene3D - 160 329 IPR043132 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00378 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251684 Dapi7g00378 Dapi23g00403
387077 Dapi23g00403 Dapi7g00378
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:109961960 Dapi7g00378 Dapi-Chr7:8250618 dispersed
Dapi Dapi-Chr23:8969757 Dapi7g00378 Dapi-Chr7:8250618 wgd