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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00421 ATGTCTATCTCCGACCACCAGCGCTCTCATTCAGACGGAAAGCACCGACGATTATTTCCGTTTTGGCAATCCGGAACAGGTTCGCCGTCGCCGTCGCCGTCGTCAACGCAGAATCATCTTCAAATTCAGACGCCGAATAGTAACGAAAACGGCGTCGCATCGAACGGCCGTTCTTCAAACAAGCTGTCATCGGTGGCGAAATCGCTTCTTCCGGCTAGGCGACGGCTCCGCCTTGATCCGGCTAACAATCTCTACTTTCCGTATGAGCCTGGTAAACAGGTGAGAAGTGCTGTTCGGATTAAAAACCATAGCAGTTCTCATGTTGCTTTCAAGTTTCAAACAACTGCACCTAAGAGCTGTTATATGCGACCTCCGGGCGGTGTTCTGGCGCCTGGTGAATGCCTCATTGCTACAGTTTTCAAGTTTGTTGAGCAACCGGACAAGAACGAAAAACAGTTGGATCAAAAGAGCAAGGTGAAGTTCAAGATAATGAGTCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAATTGTTTGATGAGCAAAAGGATGAAGTAGTTGTTGAGAGGATTTTACGAGTTATTTTCTTAAATGCGGATCGTCCTACCCCGGCATTGGAAAAACTTAAACATCAACTTGCTGAAGCGGAAGCTGAATTAGAACTACGGAAAAAACCTCCAGTGGAAACTGGTCCAAAAGTTGTGGGGAAAGGACTTGTTATTGATGAGTGGAAAGAACGAAGGGAGAAATACCTCGCTCGACAACAGGTGGAGGCTGTAGATTTGATGTGA 792 46.72 MSISDHQRSHSDGKHRRLFPFWQSGTGSPSPSPSSTQNHLQIQTPNSNENGVASNGRSSNKLSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGVLAPGECLIATVFKFVEQPDKNEKQLDQKSKVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILRVIFLNADRPTPALEKLKHQLAEAEAELELRKKPPVETGPKVVGKGLVIDEWKERREKYLARQQVEAVDLM 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00421 263 SUPERFAMILY PapD-like 64 207 IPR008962 -
Dapi7g00421 263 MobiDBLite consensus disorder prediction 1 63 - -
Dapi7g00421 263 MobiDBLite consensus disorder prediction 1 17 - -
Dapi7g00421 263 ProSiteProfiles Major sperm protein (MSP) domain profile. 75 197 IPR000535 -
Dapi7g00421 263 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 75 253 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Dapi7g00421 263 Gene3D Immunoglobulins 71 199 IPR013783 -
Dapi7g00421 263 MobiDBLite consensus disorder prediction 23 63 - -
Dapi7g00421 263 Pfam MSP (Major sperm protein) domain 76 183 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00421 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251715 Dapi7g00421 Dapi23g00448
387108 Dapi23g00448 Dapi7g00421
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:118530544 Dapi7g00421 Dapi-Chr7:9129344 dispersed
Dapi Dapi-Chr5:22948636 Dapi7g00421 Dapi-Chr7:9129344 dispersed
Dapi Dapi-Chr5:106573818 Dapi7g00421 Dapi-Chr7:9129344 dispersed
Dapi Dapi-Chr14:1582503 Dapi7g00421 Dapi-Chr7:9129344 wgd
Dapi Dapi-Chr23:9826729 Dapi7g00421 Dapi-Chr7:9129344 wgd
Dapi Dapi-Chr30:1589652 Dapi7g00421 Dapi-Chr7:9129344 wgd
Dapi Dapi-Chr7:9129344 Dapi7g03225 Dapi-Chr7:121777232 wgd