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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00424 ATGCAGCCCGACAAAACCCTACCGGAATCCGACCTACCACCAATCGCCGCCATCAAAATCAAATCATCCTCCCCTCGTTACCGCCCTACTCCCACTCCTTCCTCCACCGAAACCCCAACCGCCGGCGCACAGCGCCGTATAGGCATCGCCGTTGATCTCAGCGACGAGAGCGCCTTCGCCGTTAAGTGGGCCGTCAATCAATACCTCCGTCCCGGCGACGCCGTTATCCTGATCCACGTCCGTCCTACTTCCGTCCTGTACGGCGCCGATTGGGGATCAATTGATCTCTCAATAGTCGACACTGACAACGAAGAATCGAAGCTTAAACTCGAAGACGAGTTCAATACTTTCACTAACACGAAATCGGCTGACCTGGCACAGCCGTTAGTGGACGCGCATATTCCGTTTAAGATCCATATTGTTAAAGATCATGATATGAAAGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGTTAAGTGCGGTTATTATGGGGAGTAGAGGGTTTGGTGCGACGAAAAGAGGGAGTGATGGGAGGCTTGGGAGTGTTAGTGATTATTGTGTGCGTCATTGTGTGTGTCCTGTGGTGGTTGTCAGGTATCCTGATGAGAAAGAGGCTGCTGTGTCTGCTGAACCGATTGTTTCGGTTGCGAATGTTGATGATGAAGAAGAAGATGAGGCTGAGTTTCATGATGCAACTGAGGAGCGAAAATGTTAG 717 51.05 MQPDKTLPESDLPPIAAIKIKSSSPRYRPTPTPSSTETPTAGAQRRIGIAVDLSDESAFAVKWAVNQYLRPGDAVILIHVRPTSVLYGADWGSIDLSIVDTDNEESKLKLEDEFNTFTNTKSADLAQPLVDAHIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKEAAVSAEPIVSVANVDDEEEDEAEFHDATEERKC 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00424 238 PANTHER OS01G0783500 PROTEIN 8 237 IPR044162 -
Dapi7g00424 238 MobiDBLite consensus disorder prediction 1 43 - -
Dapi7g00424 238 Pfam Universal stress protein family 45 199 IPR006016 -
Dapi7g00424 238 CDD USP-Like 46 198 - -
Dapi7g00424 238 PRINTS Universal stress protein signature 177 199 IPR006015 -
Dapi7g00424 238 PRINTS Universal stress protein signature 44 62 IPR006015 -
Dapi7g00424 238 MobiDBLite consensus disorder prediction 219 238 - -
Dapi7g00424 238 MobiDBLite consensus disorder prediction 25 42 - -
Dapi7g00424 238 Gene3D HUPs 34 211 IPR014729 -
Dapi7g00424 238 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 202 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00424 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251718 Dapi7g00424 Dapi23g00451
381599 Dapi16g01767 Dapi7g00424
387111 Dapi23g00451 Dapi7g00424
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr30:24666186 Dapi7g00424 Dapi-Chr7:9176811 dispersed
Dapi Dapi-Chr14:1417403 Dapi7g00424 Dapi-Chr7:9176811 wgd
Dapi Dapi-Chr16:61620676 Dapi7g00424 Dapi-Chr7:9176811 wgd
Dapi Dapi-Chr23:9915462 Dapi7g00424 Dapi-Chr7:9176811 wgd
Dapi Dapi-Chr30:1424762 Dapi7g00424 Dapi-Chr7:9176811 wgd
Dapi Dapi-Chr32:69356414 Dapi7g00424 Dapi-Chr7:9176811 wgd
Dapi Dapi-Chr5:87942203 Dapi7g00424 Dapi-Chr7:9176811 wgd