AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00528 ATGGGTTGCAAGAATCGTGAAGACGACGCCTTGCTATTAACAACCATGTGTCTAATTGGCCTCTCTGTCGACGTTCACATCAAGGACGGCTCCTTTTATTCTGGAATCTTCCACACTGCCTCTCTTCACCATCCTTATGCGATTGTGTTGAAACAAGCGAAGATGATGAAGAAAGGGAGTTGTAATGCGAATGTGGCGAATGGGGATGAGATAGGAACTCTTATAATCCAATCAGAGGATCTTGTTCAAGTAGTTCCAAAGAAAGTGGTAATTCCAGCGGATGGTTTTGCCGGACATGGAGCTGGAGATGATACAGGGGCTGCTGCATGCTCCTTTTCTTCTAATGGAATTCTATTGAATGAATCAGATAAAACGACTGGCAAGTCAAACGTCGGTCAACCACGTACTCATCAAACAAGTTGCTCGTCTAGAACTGAAAACGGGTTTGCTAATGGATCTAGATCCGAGAACATTATTCACACGGCCAATGCTCTTGAAGCAAAAAATCCAGACACCAAAGGTTCAACAAAGAAGGAAGATGGTTTGAATAATCCTCAAGATAACAGAAAGAATGGTGGTCACACTGATTCATCAAGTGAAAGCGTCACTACAATAATCCTGAATTCTAACCGACCCGTTAAGGAGTTTAAACTAAACCCGGGAGCAAAAACATTTTCTCCATCATTTCCAAATAAGAGATCACCAACCGCTTTAACAATAGCAACGAGTGCGAATCTTGCATACATTCCTGACAGTTATTCTGGTGTCCCGGTTGGCGGGCCACAGCCCGAAGTTGAAATCAGCCCGTTTGCTCCCCATTCTCAGCCCGTTAAGTTTGTTTCATATGGAGCCAGTGATGTACAAGATCTTCCCCCTATTGTTGAATACATGACAAACAGGAGCCAACCCGGCAGATATGTTGGCCCGTATCATCCGGTTCAAGCAGCACCTCAGAATGTAATGGTTGGAAGATTGGGGCATGTTGTCTATGTTCATCCTGTTTCTCAAGACATGATCCCGAGCACGAATAGCTTCTCATCTGTTTTAACTCCACAACATCTACATGCCCCTAAACACCAAGGAACCGCAGCGACTCAAGCATTGCAGTTATGTGTGGCTCCATCGTTTATAGGTCAACTGCCGTTTGTTTTGCCAAGCCATATTCCAGTATCACAACCACCGCCTTACCCCTTGATGCGACCCATCTCGGTCCCTGTATCTAATGGTTTTTTAGTATCAAAATTTTCTTGA 1251 44.28 MGCKNREDDALLLTTMCLIGLSVDVHIKDGSFYSGIFHTASLHHPYAIVLKQAKMMKKGSCNANVANGDEIGTLIIQSEDLVQVVPKKVVIPADGFAGHGAGDDTGAAACSFSSNGILLNESDKTTGKSNVGQPRTHQTSCSSRTENGFANGSRSENIIHTANALEAKNPDTKGSTKKEDGLNNPQDNRKNGGHTDSSSESVTTIILNSNRPVKEFKLNPGAKTFSPSFPNKRSPTALTIATSANLAYIPDSYSGVPVGGPQPEVEISPFAPHSQPVKFVSYGASDVQDLPPIVEYMTNRSQPGRYVGPYHPVQAAPQNVMVGRLGHVVYVHPVSQDMIPSTNSFSSVLTPQHLHAPKHQGTAATQALQLCVAPSFIGQLPFVLPSHIPVSQPPPYPLMRPISVPVSNGFLVSKFS 416
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00528 416 Pfam Ataxin 2 SM domain 9 85 IPR025852 -
Dapi7g00528 416 MobiDBLite consensus disorder prediction 186 203 - -
Dapi7g00528 416 PANTHER ATAXIN 2-RELATED 5 97 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Dapi7g00528 416 MobiDBLite consensus disorder prediction 121 162 - -
Dapi7g00528 416 MobiDBLite consensus disorder prediction 171 185 - -
Dapi7g00528 416 MobiDBLite consensus disorder prediction 121 203 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00528 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
251772 Dapi7g00528 Dapi23g00545
387165 Dapi23g00545 Dapi7g00528
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1900933 Dapi Dapi16g01759 Dapi-Chr16:60336025 Dapi7g00528 Dapi-Chr7:11418208
1937905 Dapi Dapi32g01985 Dapi-Chr32:68789711 Dapi7g00528 Dapi-Chr7:11418208
2035340 Dapi Dapi23g00545 Dapi-Chr23:12231994 Dapi7g00528 Dapi-Chr7:11418208