AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dapi7g00537 | ATGGCTAGAAGCTCATTCAAACTGGAACATCCTCTCGAGAGGCGCCAAGCCGAGGCTGCTCGTATCAGGGAGAAGTATCCTGACAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAACCGACATACCTGATATCGACAAGAAGAAATATTTGGTACCTGCTGATCTGACCGTTGGACAGTTTGTTTATGTGGTGAGGAAGAGGATTAAACTGAGTGCTGAAAAAGCCATTTTTATCTTTGTGAAGAATATTTTGCCACCTACTGCTGCCATGATGTCTGCTATCTATGAGGAAAACAAAGACGAGGATGGTTTCCTGTACATGACTTACAGTGGGGAGAACACGTTTGGAGCATGTTGA | 360 | 44.72 | MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC | 119 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dapi7g00537 | 119 | FunFam | Autophagy-related protein | 1 | 117 | - | - | |
| Dapi7g00537 | 119 | Gene3D | - | 1 | 118 | - | - | |
| Dapi7g00537 | 119 | PANTHER | MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED | 4 | 117 | IPR004241 | GO:0006995(PANTHER) | |
| Dapi7g00537 | 119 | Pfam | Autophagy protein Atg8 ubiquitin like | 14 | 117 | IPR004241 | - | |
| Dapi7g00537 | 119 | CDD | Ubl-ATG8 | 12 | 114 | - | - | |
| Dapi7g00537 | 119 | SUPERFAMILY | Ubiquitin-like | 4 | 117 | IPR029071 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dapi7g00537 | K08341 | GABA(A) receptor-associated protein |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 79800 | Dapi24g00947 | Dapi7g00537 | |
| 79979 | Dapi25g00287 | Dapi7g00537 | |
| 82543 | Dapi7g00537 | Dapi8g01123 | |
| 82544 | Dapi7g00537 | Dapi9g00270 | |
| 251780 | Dapi7g00537 | Dapi23g00555 | |
| 387173 | Dapi23g00555 | Dapi7g00537 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Dapi | Dapi-Chr24:19454916 | Dapi7g00537 | Dapi-Chr7:11503879 | dispersed | |
| Dapi | Dapi-Chr27:2945444 | Dapi7g00537 | Dapi-Chr7:11503879 | dispersed | |
| Dapi | Dapi-Chr7:11503879 | Dapi8g01123 | Dapi-Chr8:24009447 | dispersed | |
| Dapi | Dapi-Chr23:12329332 | Dapi7g00537 | Dapi-Chr7:11503879 | wgd | |
| Dapi | Dapi-Chr24:21877882 | Dapi7g00537 | Dapi-Chr7:11503879 | wgd | |
| Dapi | Dapi-Chr25:5910541 | Dapi7g00537 | Dapi-Chr7:11503879 | wgd | |
| Dapi | Dapi-Chr7:11503879 | Dapi9g00270 | Dapi-Chr9:4998071 | wgd |