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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00560 ATGGCTTTCTCCTCACTTCTCCAATCAACTAACCCTCCGCCGGTTCTCGAATCATCTCGTCAATCTCTCTCCGCCTCTTCACTCGCCACTCGATCGTCGTCGTCGTCGTTAAAGCTTCCATCCGCCTCGATATCTTGTTCACGGAGAATCAATCTAATTAAAGCTACTGCTACTCAGACGCCCCCAATTGTTCCAAGTTTTGGAAGAATCGGGAGAGACCCTGCAACTATTCCTTGGGGTGATTTTGGAGCCGACTATGTTATAGAATCTTCTGGAGTTTTTACAACACTCGATAAGGCCTCGGCACACAAGAAGGTGGTTCATGAGGAGTTTGGTATTGTTGAAGGTCTGATGACAACCGTCCATGCAACCACAGCTACACAAAAAACGGTTGACGGGCCTTCAATGAAAGACTGGCGTGGAGGTCGTGGTGCTGCACAAAACATCATCCCTAGTTCAACTGGTGCTGCCAAAAGTGCTTCTTATGAAGACGTTAAAGCTGCAATAAAGTATGCCTCTGAGGGTCCCATGCAAGGAATTCTTGGGTACACCGATGAAGATGTTGTCTCCAACGATTTTGTCGGCGATTCCAGGTCAAGTATTTTCGATGCAAAGGCCGGCATAGGGCTAAGCGCATCGTTTGTGAAGCTGGTGTCCTGGTACGACAATGAGTGGGGTTACAGCAACCGGGTGTTGGACCTGATAGAGCATATGGCATTGGTGGCAGCAACTTCCAACTGA 741 48.45 MAFSSLLQSTNPPPVLESSRQSLSASSLATRSSSSSLKLPSASISCSRRINLIKATATQTPPIVPSFGRIGRDPATIPWGDFGADYVIESSGVFTTLDKASAHKKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKSASYEDVKAAIKYASEGPMQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAATSN 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00560 246 Gene3D - 72 103 - -
Dapi7g00560 246 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 105 159 IPR020829 GO:0016620(InterPro)
Dapi7g00560 246 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 120 IPR036291 -
Dapi7g00560 246 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 104 221 - -
Dapi7g00560 246 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 192 IPR020831 GO:0016620(InterPro)
Dapi7g00560 246 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 92 108 IPR020831 GO:0016620(InterPro)
Dapi7g00560 246 Gene3D - 224 238 - -
Dapi7g00560 246 MobiDBLite consensus disorder prediction 1 22 - -
Dapi7g00560 246 Gene3D Dihydrodipicolinate Reductase; domain 2 104 158 - -
Dapi7g00560 246 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 72 105 IPR020831 GO:0016620(InterPro)
Dapi7g00560 246 Gene3D Dihydrodipicolinate Reductase; domain 2 159 223 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00560 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr7:11965971 Dapi8g00089 Dapi-Chr8:1679918 dispersed
Dapi Dapi-Chr7:11958781 Dapi7g00560 Dapi-Chr7:11965971 tandem