AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dapi7g00567 | ATGACCAACATTTGTTGTAAATCAGTTAGCCGGATAAATGAAATACTCCGGCCAACATCTTTTATATCCGAAATTCAATCACTTTTAGACCTACTAGGAAAGCTAGACAGTGCTGTCAAATTCACTATTTCCCACCCAATTCACTTCCATCATCCTCCTTATGTCAAACTTTTAAACCTTTGCATTGATAAACAAGCCTATAATCATGCCCGTACGGTGCACGAGCATCTTTATACGCACGGGTTTCGTTCAAATTTACATATAAACACTAAATTAGTAATATTGTATTCAAAATCTGGTGACATGAAAAGCGCCCGCCAAGTGTTCGATGAAATGCCTGAGAGAAGTGTGGTTTCTTGGACTGCATTGTTGTCTGGGTATTGTCGGAACGGGTACGATGAGGAAGCTGTGAGAGTGTTTGTTGGCATGCGTCGGGCGGGTGTCATGGCTAATCAGTTCGGTTACGCGAGCACGTTGAGTGCGTGTACAAGGTTGATGTGTTTAAGTTATGGGTTGCAGATACAAGGGTGTGTTCATAAGGGGAGGTTTCTTTATTATTCTTTTGTGCAGTGTGCATTGATTGAATTGCATTCAAAATGTGGTGAGATTGAGGATGCTTGTTATTTTTTTGATATGATGTCGGTTAAAGATTTGGTTTCTTGGAATTCGATGATTGGCGGATTTGCTGTTCGAGGGTTTTGCAATGATGCTATTTTAATGTTCCGGTTAATGTTTCGTGACGGTATGACTCCTGACAACTTCACATTGGCAAGTGTTCTCGTGGCTTGTGCTCGAAGTAAAGATCTTGCAAACGTCATGCAGCTACACGGGTTTGTTTTAAAATTAGGTTTTGGATCATATAACAGTTTAAACGGGTCACTTATTAATGCGTATTCAAAAGGTGGAAGTGTGAGAAGTGCAGATCGAATATACAAAAACATGGTTAAAAAAGATGCAATATCTTGCACTGCATTAATAGCAGGGTATGCTAACGAAGGTAGTAATAGTAACACCATGGATGCCATGAATCTTTTCATTGAATTGCATCGAGTACTCACGAATGTTGACAGTGTAATATTGTGCTCAATGATCAACATTTGTGCCAACACAACGTCATTAGGTTTAGGAAAACAAATGCATGCTCTGTCCTTAAAATGTTTGGGTTACCATGATGTACCCATGAGTAATGCTCTTATTGACATGTACTCAAAATGTGGTGAAATCATGGATGCACGTCACGTCAAGATGACAGATGATTGCATAGGCCCAGAAGTTGAGAAACTGGTGGCTGCGATCCCAGAAGGGGGTGTTTTGCTTCTTGAAAATGCCAGATTTTATAAAGAGGAGAAAAACGACCCCGAATTTGCCAGACTTATACGGTCTGATAATACTTTCCTCAAAATACAAACCCTTTTCTCTCATCATACTGGTTTGGGTTTGGGTTTTGGAAAGATAAAGAGTGATAAATTGCGTCTTCTTGACACCAATAACAAGAATTCCGTCAATCGATTATCAATTTTCGCTTTCATATGGTGTTTACAATATCATCTTTTCAGGGTTTCTGATCAAATGGCCTCTGCCTTTCTTTCAAGAACACTCTTTGCTCGTCGTTTCGTTTCGTCTTCCGCGATTATTCAAAACCCACAAAAATTGAGTTCTGTTTTCTTTAAACCCTTTCAATCGTGGGCTAGCCCAACCCGTACGGCATACAGGAGGTCTACCTTGGTTCGGGGTGACATGGCAACAACTGTGGTTGGATCTACGGCTTCTTTTTCAACACGGTCCGTGTCGACTAGCGAGCCTGTTGTGTCAGTTGACTGGCTCCATGCCAATCTGCGTGAGCCTGATTTGAAGGTGCTGGATGCATCCTGGTACATGCCTGATGAACAGAGGAATCCACTCCAGGAGTACCAGGTTGCCCACATTCCTGGTGCTCTTTTCTTTGACGTTGATGGGATATCAGATCGAACTACTAATCTGCCACACATGTTGCCATCTGAGGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCTGCACGTGTCTGGTGGATGTTGCGAGTTTTTGGGCACGATAGAGTATGGGTATTAGATGGAGGGCTTCCGAGATGGCGTGCTTCAGGATTTGATGTTGAATCGAGTGCTTCTAGTGATGCAATTTTGAAAGCGAGTGCTGCCAGCGAGGCGATAGAGAAAGTGTACCAAGGCCAGCCTGTTGGTCCAGTGACATTTCAAACAATATATCAGCCGCATCTCGTGTGGACACTTGAACAGGTTAAAAAGAACACAGAGGACCAAACATATCAACACGTAGATGCTCGGTCGAATGCTAGGTTTGATGGTATTGCAGCTGAGCCTCGAAAAGGAATAAGAAGTGGGCATGTGCCTGGGAGTAAGTGCATTCCTTTTGGCCAGATGTTAGACTACAGCTCACAGACACTGCGACCTGCAGACCAGCTCAAGAAAGAGTTTGAACAACAGGAGATCTCATTGGACAAGCCTGTCGTGGCTTCATGCGGAACTGGAGTTACTGCATGCATTCTTGCATTGGGACTCCATCGACTTGGGAAGACAGATGTTCCGGTTTATGATGGATCTTGGACAGAATGGGGAGCGCATGAAGACACTCCTGTTTCAACTTCAGTTTCAGAATCAAGTGTTTAA | 2715 | 42.8 | MTNICCKSVSRINEILRPTSFISEIQSLLDLLGKLDSAVKFTISHPIHFHHPPYVKLLNLCIDKQAYNHARTVHEHLYTHGFRSNLHINTKLVILYSKSGDMKSARQVFDEMPERSVVSWTALLSGYCRNGYDEEAVRVFVGMRRAGVMANQFGYASTLSACTRLMCLSYGLQIQGCVHKGRFLYYSFVQCALIELHSKCGEIEDACYFFDMMSVKDLVSWNSMIGGFAVRGFCNDAILMFRLMFRDGMTPDNFTLASVLVACARSKDLANVMQLHGFVLKLGFGSYNSLNGSLINAYSKGGSVRSADRIYKNMVKKDAISCTALIAGYANEGSNSNTMDAMNLFIELHRVLTNVDSVILCSMINICANTTSLGLGKQMHALSLKCLGYHDVPMSNALIDMYSKCGEIMDARHVKMTDDCIGPEVEKLVAAIPEGGVLLLENARFYKEEKNDPEFARLIRSDNTFLKIQTLFSHHTGLGLGFGKIKSDKLRLLDTNNKNSVNRLSIFAFIWCLQYHLFRVSDQMASAFLSRTLFARRFVSSSAIIQNPQKLSSVFFKPFQSWASPTRTAYRRSTLVRGDMATTVVGSTASFSTRSVSTSEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMLRVFGHDRVWVLDGGLPRWRASGFDVESSASSDAILKASAASEAIEKVYQGQPVGPVTFQTIYQPHLVWTLEQVKKNTEDQTYQHVDARSNARFDGIAAEPRKGIRSGHVPGSKCIPFGQMLDYSSQTLRPADQLKKEFEQQEISLDKPVVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAHEDTPVSTSVSESSV | 904 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dapi7g00567 | 904 | Pfam | PPR repeat family | 116 | 163 | IPR002885 | - | |
| Dapi7g00567 | 904 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 170 | 271 | - | - | |
| Dapi7g00567 | 904 | SUPERFAMILY | Phosphoglycerate kinase | 412 | 458 | IPR036043 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Dapi7g00567 | 904 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | IPR002885 | - | |
| Dapi7g00567 | 904 | Gene3D | Tetratricopeptide repeat domain | 34 | 177 | IPR011990 | GO:0005515(InterPro) | |
| Dapi7g00567 | 904 | ProSiteProfiles | Rhodanese domain profile. | 781 | 896 | IPR001763 | - | |
| Dapi7g00567 | 904 | FunFam | Pentatricopeptide repeat-containing protein | 67 | 169 | - | - | |
| Dapi7g00567 | 904 | ProSitePatterns | Rhodanese C-terminal signature. | 877 | 887 | IPR001307 | GO:0004792(InterPro) | |
| Dapi7g00567 | 904 | Gene3D | - | 397 | 467 | IPR015824 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Dapi7g00567 | 904 | SUPERFAMILY | Rhodanese-Cell cycle control phosphatase | 600 | 732 | IPR036873 | - | |
| Dapi7g00567 | 904 | Gene3D | Tetratricopeptide repeat domain | 178 | 284 | IPR011990 | GO:0005515(InterPro) | |
| Dapi7g00567 | 904 | Gene3D | Tetratricopeptide repeat domain | 285 | 379 | IPR011990 | GO:0005515(InterPro) | |
| Dapi7g00567 | 904 | Pfam | Rhodanese-like domain | 604 | 723 | IPR001763 | - | |
| Dapi7g00567 | 904 | Pfam | Rhodanese-like domain | 772 | 889 | IPR001763 | - | |
| Dapi7g00567 | 904 | CDD | TST-Repeat-2 | 772 | 889 | - | - | |
| Dapi7g00567 | 904 | Pfam | PPR repeat | 293 | 317 | IPR002885 | - | |
| Dapi7g00567 | 904 | Pfam | PPR repeat | 219 | 248 | IPR002885 | - | |
| Dapi7g00567 | 904 | Pfam | PPR repeat | 192 | 216 | IPR002885 | - | |
| Dapi7g00567 | 904 | Pfam | Phosphoglycerate kinase | 406 | 458 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Dapi7g00567 | 904 | Gene3D | - | 595 | 737 | IPR036873 | - | |
| Dapi7g00567 | 904 | FunFam | Sulfurtransferase | 595 | 737 | - | - | |
| Dapi7g00567 | 904 | NCBIfam | pentatricopeptide repeat | 219 | 252 | IPR002885 | - | |
| Dapi7g00567 | 904 | NCBIfam | pentatricopeptide repeat | 118 | 148 | IPR002885 | - | |
| Dapi7g00567 | 904 | CDD | TST-Repeat-1 | 602 | 725 | - | - | |
| Dapi7g00567 | 904 | FunFam | Sulfurtransferase | 766 | 898 | - | - | |
| Dapi7g00567 | 904 | ProSitePatterns | Rhodanese signature 1. | 637 | 648 | IPR001307 | GO:0004792(InterPro) | |
| Dapi7g00567 | 904 | SMART | rhod-4 | 603 | 727 | IPR001763 | - | |
| Dapi7g00567 | 904 | SMART | rhod-4 | 771 | 893 | IPR001763 | - | |
| Dapi7g00567 | 904 | Gene3D | - | 766 | 901 | IPR036873 | - | |
| Dapi7g00567 | 904 | ProSiteProfiles | Rhodanese domain profile. | 613 | 730 | IPR001763 | - | |
| Dapi7g00567 | 904 | SUPERFAMILY | Rhodanese-Cell cycle control phosphatase | 774 | 899 | IPR036873 | - | |
| Dapi7g00567 | 904 | PANTHER | THIOSULFATE SULFERTANSFERASE | 599 | 899 | IPR045078 | GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro) | |
| Dapi7g00567 | 904 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 116 | 150 | IPR002885 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dapi7g00567 | K01011 | thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Dapi | Dapi-Chr23:12897731 | Dapi7g00567 | Dapi-Chr7:12060791 | dispersed | |
| Dapi | Dapi-Chr7:12060791 | Dapi16g00615 | Dapi-Chr16:9074900 | dispersed | |
| Dapi | Dapi-Chr7:12055608 | Dapi7g00567 | Dapi-Chr7:12060791 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Dapi31g01040 | DST,WGDA | 28 | 146 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 53.333 | 1.40e-43 | 139.0 | |
| Dapi11g01996 | DST | 1 | 292 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 64.548 | 1.31e-138 | 391.0 | |
| Dapi27g01943 | DST | 1 | 292 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 64.883 | 2.62e-139 | 393.0 | |
| Dapi19g01429 | . | 348 | 564 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 28.07 | 1.14e-14 | 70.5 | |
| Dapi19g01262 | DST,WGDA | 24 | 156 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 51.493 | 2.57e-41 | 135.0 | |
| Dapi28g01027 | . | 156 | 254 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 51.456 | 7.12e-25 | 95.1 | |
| Dapi20g01689 | DST,WGDA | 31 | 198 | Sulfurtransferasese/Rhodanese gene family | AT3G08920 | 64.327 | 5.20e-81 | 239.0 | |
| Dapi18g01758 | DST | 46 | 222 | Sulfurtransferasese/Rhodanese gene family | AT4G27700 | 80.226 | 1.57e-107 | 306.0 | |
| Dapi1g01536 | DST | 96 | 179 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 34.021 | 3.38e-08 | 49.3 | |
| Dapi26g02286 | . | 94 | 299 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 66.346 | 6.22e-105 | 306.0 | |
| Dapi13g01328 | DST | 97 | 461 | Sulfurtransferasese/Rhodanese gene family | AT2G40760 | 77.26 | 0.0 | 585.0 | |
| Dapi1g02424 | DST | 82 | 242 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 39.877 | 7.31e-28 | 111.0 | |
| Dapi10g02171 | . | 25 | 299 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 57.092 | 1.03e-106 | 310.0 | |
| Dapi29g00413 | DST | 32 | 383 | Sulfurtransferasese/Rhodanese gene family | AT5G23060 | 64.205 | 4.10e-161 | 456.0 | |
| Dapi30g02307 | DST | 78 | 438 | Sulfurtransferasese/Rhodanese gene family | AT1G17850 | 63.736 | 9.68e-170 | 481.0 | |
| Dapi27g01022 | DST | 341 | 564 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 28.821 | 1.12e-15 | 74.7 | |
| Dapi27g00819 | DST | 1 | 230 | Sulfurtransferasese/Rhodanese gene family | AT2G42220 | 64.348 | 7.44e-107 | 306.0 | |
| Dapi4g01748 | DST,WGDA | 31 | 198 | Sulfurtransferasese/Rhodanese gene family | AT3G08920 | 63.743 | 3.26e-80 | 237.0 | |
| Dapi25g00270 | DST | 1 | 464 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 69.658 | 0.0 | 666.0 | |
| Dapi25g00458 | DST | 72 | 261 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 24.885 | 4.60e-11 | 62.4 | |
| Dapi8g02433 | DST | 17 | 90 | Sulfurtransferasese/Rhodanese gene family | AT5G03455 | 65.789 | 7.28e-31 | 104.0 | |
| Dapi8g02784 | DST | 162 | 348 | Sulfurtransferasese/Rhodanese gene family | AT5G23060 | 30.688 | 9.86e-19 | 86.3 | |
| Dapi14g02317 | DST | 72 | 297 | Sulfurtransferasese/Rhodanese gene family | AT1G17850 | 64.035 | 8.26e-103 | 308.0 | |
| Dapi24g02554 | DST | 17 | 145 | Sulfurtransferasese/Rhodanese gene family | AT5G03455 | 67.939 | 6.42e-65 | 192.0 | |
| Dapi11g00768 | DST | 1 | 230 | Sulfurtransferasese/Rhodanese gene family | AT2G42220 | 64.783 | 9.89e-107 | 305.0 | |
| Dapi11g00986 | . | 443 | 577 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 28.378 | 7.19e-10 | 56.6 | |
| Dapi11g00987 | DST | 444 | 577 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 29.932 | 1.68e-12 | 63.5 | |
| Dapi7g00567 | . | 1 | 379 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 71.654 | 0.0 | 572.0 | |
| Dapi7g00781 | DST,WGDA | 12 | 581 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 65.451 | 0.0 | 791.0 | |
| Dapi17g03083 | DST | 82 | 242 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 39.877 | 1.03e-27 | 111.0 | |
| Dapi1g00010 | . | 1 | 456 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 53.731 | 3.69e-141 | 411.0 | |
| Dapi9g00447 | DST | 72 | 261 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 24.885 | 4.60e-11 | 62.4 | |
| Dapi24g02854 | DST | 162 | 348 | Sulfurtransferasese/Rhodanese gene family | AT5G23060 | 30.688 | 1.03e-18 | 86.3 | |
| Dapi10g01669 | DST | 45 | 181 | Sulfurtransferasese/Rhodanese gene family | AT4G35770 | 57.971 | 1.96e-53 | 167.0 | |
| Dapi10g01787 | DST | 81 | 222 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 31.469 | 5.26e-12 | 65.9 | |
| Dapi1g00597 | DST | 26 | 142 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 49.573 | 6.27e-39 | 127.0 | |
| Dapi9g00248 | DST | 1 | 464 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 69.658 | 0.0 | 665.0 | |
| Dapi30g00148 | DST | 74 | 280 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 24.803 | 8.92e-06 | 47.0 | |
| Dapi4g01865 | DST,WGDA | 130 | 189 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 50.0 | 4.53e-06 | 47.0 | |
| Dapi17g00011 | . | 1 | 456 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 53.205 | 4.74e-136 | 410.0 | |
| Dapi6g01854 | . | 189 | 247 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 47.222 | 3.85e-12 | 58.9 | |
| Dapi2g02675 | DST,WGDA | 62 | 222 | Sulfurtransferasese/Rhodanese gene family | AT4G27700 | 82.609 | 3.62e-97 | 289.0 | |
| Dapi23g00794 | DST,WGDA | 13 | 581 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 65.739 | 0.0 | 792.0 | |
| Dapi23g00586 | . | 1 | 379 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 71.875 | 0.0 | 570.0 | |
| Dapi14g00144 | DST | 74 | 280 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 24.803 | 8.92e-06 | 47.0 | |
| Dapi26g01794 | DST | 81 | 216 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 32.117 | 7.58e-12 | 65.5 | |
| Dapi26g01681 | DST | 45 | 181 | Sulfurtransferasese/Rhodanese gene family | AT4G35770 | 59.42 | 1.04e-53 | 169.0 | |
| Dapi17g02083 | DST | 96 | 179 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 34.021 | 2.98e-08 | 49.3 | |
| Dapi17g00645 | DST | 10 | 116 | Sulfurtransferasese/Rhodanese gene family | AT5G66040 | 52.336 | 3.43e-38 | 124.0 | |
| Dapi29g01535 | . | 166 | 233 | Sulfurtransferasese/Rhodanese gene family | AT4G24750 | 67.647 | 1.32e-25 | 94.4 | |
| Dapi29g01354 | DST | 97 | 461 | Sulfurtransferasese/Rhodanese gene family | AT2G40760 | 77.26 | 0.0 | 585.0 | |
| Dapi15g00476 | DST | 28 | 146 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 50.833 | 1.27e-38 | 126.0 | |
| Dapi13g00409 | DST | 19 | 383 | Sulfurtransferasese/Rhodanese gene family | AT5G23060 | 61.918 | 1.26e-160 | 454.0 |