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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00568 ATGACCATTTCTTCACTTGTCGCCTCTCGCATCTTGATCTCCTCCACCGGATTCTTCACTGATATTCATATAATATGGGTGACAGTCAGTACTCTTTCTCCCTTACTACTTTCAGAGCTGATTAGTCCTTCTGGAAAGCTTGTTCAGATTGAACATGCCCTAACAGCTGTTGGCTCTGGCCAAACTTCATTGGGGATTAAAGCTTCTAATGGTGTCGTAATTGCAACCGAAAAGAAGCTCCCATCCATTTTAGTCGACGAGACATCGGTGCAAAAGATCCAGATTTTGACTCCTAATATCGGAGTTGTTTACAGTGGGATGGGGCCCGATTCACGAGTTTTGGTCAGAAAGAGTAGGAAGCAGGCAGAGCAATACAATCTGCTATACAAAGAACCAATCCCTGTTACGCAACTTGTAAGGGAAACTGCTGCTGTTATGCAAGAATTTACTCAATCAGGTGGTGTAAGGCCTTTTGGTGTTTCACTCCTTGTTGCTGGTTACGATGACAAAGGTCCCCAACTTTATCAGGTGGATCCCTCAGGTTCATATTTCTCCTGGAAGGCTTCAGCCATGGGAAAGAATGTATCCAATGCAAAGACATTTCTTGAAAAGAGGTACACTGATGATATGGAGCTTGAAGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATATCTGGGAAAAACATCGAGATTGGTGTTATCGAGGCTGACAGAACATTCAGAGTCCTGACTGCAGCTCAAATTGAAGACTATCTTCAAGAGGTGGAATAG 792 43.18 MTISSLVASRILISSTGFFTDIHIIWVTVSTLSPLLLSELISPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYNLLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRTFRVLTAAQIEDYLQEVE 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00568 263 CDD proteasome-alpha-type-2 42 259 - -
Dapi7g00568 263 FunFam Proteasome subunit alpha type 35 263 - -
Dapi7g00568 263 ProSiteProfiles Proteasome alpha-type subunit profile. 49 259 IPR023332 -
Dapi7g00568 263 Pfam Proteasome subunit 59 241 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Dapi7g00568 263 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 41 260 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Dapi7g00568 263 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 262 IPR029055 -
Dapi7g00568 263 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 38 263 IPR029055 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00568 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251796 Dapi7g00568 Dapi23g00587
387189 Dapi23g00587 Dapi7g00568
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr7:12091453 Dapi7g01532 Dapi-Chr7:67503907 dispersed
Dapi Dapi-Chr23:12910598 Dapi7g00568 Dapi-Chr7:12091453 wgd