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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00629 ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACAGTCTCGATCGAGCTCAAAAACGGGACGGTTGTACACGGAACCATCACAGGTGTTGATATTAGCATGAACACACACTTGAAGACGGTGAAGTTGACACTGAAAGGGAAAAATCCTGTAACCCTTGATCATTTGAGCGTGAGAGGCAATAACATTCGTTACTATATACTTCCCGACAGCTTGAATTTGGAGACTTTGCTAGTCGAAGAGACACCTAGAGTCAAGCCCAAGAAGCCAACTGCAGGGCGGCCTGTGGGACGTGGTCGGGGCCGCGGACGAGGCCGTGGACGTGGTCGCGGCGGGCGTTAG 348 50.57 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGGR 115
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00629 115 MobiDBLite consensus disorder prediction 83 115 - -
Dapi7g00629 115 Gene3D - 50 82 - -
Dapi7g00629 115 Gene3D - 1 49 - -
Dapi7g00629 115 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 110 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Dapi7g00629 115 SMART Sm3 5 70 IPR001163 -
Dapi7g00629 115 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Dapi7g00629 115 CDD Sm-D1 2 93 IPR034102 GO:0000387(InterPro)
Dapi7g00629 115 Pfam LSM domain 5 69 IPR001163 -
Dapi7g00629 115 MobiDBLite consensus disorder prediction 93 115 - -
Dapi7g00629 115 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723(InterPro)
Dapi7g00629 115 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00629 K11087 small nuclear ribonucleoprotein D1
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Event-related genes

Select Gene_1 Gene_2 Event_name
251821 Dapi7g00629 Dapi23g00641
387214 Dapi23g00641 Dapi7g00629
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr27:5308755 Dapi7g00629 Dapi-Chr7:13833832 transposed
Dapi Dapi-Chr32:48396019 Dapi7g00629 Dapi-Chr7:13833832 transposed
Dapi Dapi-Chr23:14714559 Dapi7g00629 Dapi-Chr7:13833832 wgd