AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00632 ATGGCTTCATCAGGAAACCAAAATCAACAACCACCGTTCGATGTTCAACGATTATTCAACCCGATTTCCTCACCACCTCCAATCACACCTCTCCAAAACCCTAACAATTATCATATTAATCTACCTTCTTCCGCCTCTTCTTATCCTCCTCCAACCGTCAACGGCCTTCCGTACACTTACCAACCGCCTCAACAACCAAACCCTATATTCCACCATCAGTTCCATCTTCCACCTCCTCCTTTCCATAATCAACAATCAGATGACAATTCACCTTCTCATTTGCCACATCAGCGTTCCCTTCCTTACCCTACCATCCCTCTCCAACCGCCCACCCCTAATAATACAAACCCTAACCCTAACCCTAACCCTAACCATGGAGCTCGCCTCATGGCTCTATTAAGCGCTCCACCGCCTTCTATTCCTGATATTCCATCTCAATTAACAATGCCTTTATCGACTGTTCCTATACCTAGCCCTAGTTTTAACCGCCCTTCCTCGCCTGGTCCGTCGCGGATGCCGAGTAGTAAGCTGCCGAAAGGACGGCATTTGATCGGTGATCGCGTTGTTTATGACATTGATGTTAGGTTGCCTGGGGAGATTCAGCCACAGCTTGAGGTCACTCCGATTACTAAGTATGGTTCGGATCCGAATTTGGTCGTGGGGCGTCAGATTGCTGTTAACAATACTTATATATGTTATGGTTTGAAACCGGGGACAATTAGGGTTCTTAATATAAACACTGCATTGAGATCATTGCTTAAAGGTCTTGTTCAGAGGGTTACAGATATGTCTTTCTTCGCAGAGGACGTTCATCTTCTAGCCAGTGCAAGCATGGATGGGCGAGTTTACGTATGGAAGATTCTAGAAGTTCCCGATGAGGAAGATAAGCCACAGATCACTGGAAAAATAGTTACTGCAGTCCAAATTCTAGGAGGAGGAGGAGGAGAACCTGTTCATCCTAGGGTTTGTTGGCACTGCCATAAGCAAGAAGTTCTTGTAGTAGGAATTGGGAATCATATTCTCAGATTTGATACTACAAAGGTTGGGAGAGGTAAAGTATATTCAGCAGATGAACCTCTCAAATGCACTGTTGATAAGTTGATTGATGGCATTCATTTTGTTGGTAAGCATGATGGTGAAATTACAGATCTATCCATGTGTCAATGGATGACCTCTCGTCTAGTTTCTGCTTCAGTAGATGGAACGATAAAGATTTGGGAAGATCGCAAATCATCACCTATTGCAGTACTGAGGCCACACGATGGCCTTCCTGTTAATTCTGTTACATTCTTAACTGCTCCTCATCGCCCAGATCACATCATACTTATCACAGGAGGCCCGTTGAATCGTGAATTGAAAATATGGGCCTCTGAAAGTGAAGAAGGATGGTTGCTTCCTAGTGATGCTGATTCATGGCGTTGTACTCAAACATTGGAGTTAAAAAGCTCTGCTGAATCAAGAATTGAAGATGCGTTCTTTAATCAAGTAGTTGCATTACCTCAATCTGGTCTTCTTTTACTAGCAAATGCCAAGAGAAATGCTATATATGCTGTACACTTGGATTACGGTCCCAATCCAGAAGCAACCCGTTTGGACTACGTTGCTGAGTTCACTGTTACTATGCCAATATTGAGTTTTACTGGTACTAGTAATCCGTTACCAAATGGGTACCAGATTCAGGTTTACTGTGTCCAAACACAAGCCATTCAACAATACGCTTTAGACTTATCACAGTGCCTACCACCTCCCGTTTATGATGTCTTTGAGAAATCTGGTTCAACCGTGTCACATGATGCAACGGTTATTGGTTTGGAACCGTCTGGTGATAAATTGGATGAGATGGCTCAGGCTAGCCCAGGACTTAGTCCGAGACATAGCCCGGACAGGGTACCAACATTGAGTTCTAATGAGCTGAAGGATACCGATACTGATGTTTCATGTATTGCATCAACAATGGTTCAATCCAGCCCTAAGTTGTCAGGAAAAGTTTCTGACTTTAGAAGTCCATCTGGCAGTGGCAGGTTTGAGCCACGTCAGCAACTAAACGGTTATGATGATCAGAAAATCATGGAGGAAATACAATTGGAGACTGCTCGTTCAAACATATCTAATGCTGCCTCGTTGGATGATGATGATGATCGGGCGGTCAAGTTTAAGCATCCAACTCATCTGGTAACTCCTGCTGAATTGATGGCGACATCATCCTCTGAAGTAAATCATGTTGACGGTTTGCGTGATATGACAGTAAACTCTGATACACAGAATGCTGAGGTGGAGGTTAAGGTTGTGGGTGAAATGGGAATTAGTCAAAATACTGTTATTCCCTTGAAAGTGGAGCTTAATGGTTCTGCTTATGAAGAAAAGGAAAAATCTAGAATTTTCTCATCACAGGCATCAGGACTTGGGCTTGATTTGGCACGTGATTATGAGTCTACACAATTGGATCAAATTGCAGATGTTCAGGATGAAATTGATGACGTGGCAACTGATCTAGCTGGATCCGTTGAGATGTTTGTGTCTGGAGTAGTTCAATCAGTGGCTCCCTCTTCACGAGAAAAAAAGAAGAAGAAAAAGAATGCTCAAGTATCAGGTCAATCTTCTTCAAGTGTCTTTAAGTCAACTAATTCTTGTGATGAGCTAGGAGTAACTTCAAGTATTCCCTCAGCAGAAGTTATACTTGCACAGATTCAGTCCATGCAAGAAACACTTAATCAGGTTTTGATCAATCAAAAGGAAATCCAGAAGCAGATTCCAGCGGTTGCTGCAGTACCAATTACAAAAGAAGGGAAAAGGATAGAGGCAGCCATTGGTAAAAGCATGGAGAAAATTCATAAAGCTAATTCCGATGCTTATTGGGCTCGTTTTCATGAAGAGTTTGGAAAACAGGAAAAGTCAAACAAAGACCATCATCAGCAAATATCGAATTCCGCCTCAAATGGCCACAAAGAATTTCTTGCAGCATCAGAGAAAATGCTCAAGAAGGAAATGGCTGCAGTGGTGCCAGTTGTTGGACGCTCCGTAATTCCAATTATTGAGAAAGCAGTCTCTACAGCTGTCTCAGAGGCTTTCCAGAGGGGAATAGGTGATAAAGCTGTAAATCAACTGGACAAAGCAGTTAATTCCAAACTGGAAGCTACTGTATCGAGACAAATTCAAACTCAATTTCAAACTTCTGGCAAACAAGCTCTACAGGAAACACTGAGGTCAAGTATGGAGGCTTCTGTTGTTCCTGCCTTTGAGATGTCTTGCAAGTCAATGTTTGACCATGTTGATGCCACATTTCACAAGGGAATGATGGATCACACAACTGCAATTCAGCAGCAAGTTGAGTCCATGCATTCTCCTTTGGCATTTACTTTGAGGGATACCATCAATTCAGCATCATCTCTGAGTCAAACATTGAGCAGTGAATTTGCTGATAGTCAAAGGAAGTTAATGGCTCTTGCAGTTGCTGGAGCCAGTTCTAAATCGGCAAATCCATTAATAAGCCAACTAAGCAACGGGCCTTCAGGTGTTTTCCATGAAAAGATTGAAGCACCAGTGGACCCCACAAAAGAGCTATCTAGGTTGGCATATGAGCACAAATTTGAGGAGGCCTTTACTGCTGCCCTGCAAAGAAGTGATGTTCGCATCGTTTCCTGGTTATGCTCTCAGGTTGATCTACAGGGGATATTAGCGAGTAATCCTGTTCCTCTGAGCCAAGGGGTACTGCTGTCATTATTGCAGCAATTGGCGTGTGATATTGGGAACGATACGTCTAAGAAACTTGGTTGGATGATGGATGTGGTGGTGGCTATCAAACCAACGGACGGGATCATTGCAATGCATGTAAGGCCAATATTTGAACAAGTGCACTCGATTCTAAACCATCAGATGAGTGTTCCCACGACCTCGGTTTCTGAGATTTCCAGTATTCGTGTGGTTATGAAACTTATAAACTCGACGTTAAGGAGCCTGTAA 3960 43.08 MASSGNQNQQPPFDVQRLFNPISSPPPITPLQNPNNYHINLPSSASSYPPPTVNGLPYTYQPPQQPNPIFHHQFHLPPPPFHNQQSDDNSPSHLPHQRSLPYPTIPLQPPTPNNTNPNPNPNPNHGARLMALLSAPPPSIPDIPSQLTMPLSTVPIPSPSFNRPSSPGPSRMPSSKLPKGRHLIGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPNLVVGRQIAVNNTYICYGLKPGTIRVLNINTALRSLLKGLVQRVTDMSFFAEDVHLLASASMDGRVYVWKILEVPDEEDKPQITGKIVTAVQILGGGGGEPVHPRVCWHCHKQEVLVVGIGNHILRFDTTKVGRGKVYSADEPLKCTVDKLIDGIHFVGKHDGEITDLSMCQWMTSRLVSASVDGTIKIWEDRKSSPIAVLRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNRELKIWASESEEGWLLPSDADSWRCTQTLELKSSAESRIEDAFFNQVVALPQSGLLLLANAKRNAIYAVHLDYGPNPEATRLDYVAEFTVTMPILSFTGTSNPLPNGYQIQVYCVQTQAIQQYALDLSQCLPPPVYDVFEKSGSTVSHDATVIGLEPSGDKLDEMAQASPGLSPRHSPDRVPTLSSNELKDTDTDVSCIASTMVQSSPKLSGKVSDFRSPSGSGRFEPRQQLNGYDDQKIMEEIQLETARSNISNAASLDDDDDRAVKFKHPTHLVTPAELMATSSSEVNHVDGLRDMTVNSDTQNAEVEVKVVGEMGISQNTVIPLKVELNGSAYEEKEKSRIFSSQASGLGLDLARDYESTQLDQIADVQDEIDDVATDLAGSVEMFVSGVVQSVAPSSREKKKKKKNAQVSGQSSSSVFKSTNSCDELGVTSSIPSAEVILAQIQSMQETLNQVLINQKEIQKQIPAVAAVPITKEGKRIEAAIGKSMEKIHKANSDAYWARFHEEFGKQEKSNKDHHQQISNSASNGHKEFLAASEKMLKKEMAAVVPVVGRSVIPIIEKAVSTAVSEAFQRGIGDKAVNQLDKAVNSKLEATVSRQIQTQFQTSGKQALQETLRSSMEASVVPAFEMSCKSMFDHVDATFHKGMMDHTTAIQQQVESMHSPLAFTLRDTINSASSLSQTLSSEFADSQRKLMALAVAGASSKSANPLISQLSNGPSGVFHEKIEAPVDPTKELSRLAYEHKFEEAFTAALQRSDVRIVSWLCSQVDLQGILASNPVPLSQGVLLSLLQQLACDIGNDTSKKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVHSILNHQMSVPTTSVSEISSIRVVMKLINSTLRSL 1319
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00632 1319 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 206 520 IPR032401 -
Dapi7g00632 1319 SMART WD40-4 368 407 IPR001680 GO:0005515(InterPro)
Dapi7g00632 1319 SMART WD40-4 410 456 IPR001680 GO:0005515(InterPro)
Dapi7g00632 1319 SMART WD40-4 246 286 IPR001680 GO:0005515(InterPro)
Dapi7g00632 1319 Gene3D - 199 515 IPR015943 GO:0005515(InterPro)
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 605 638 - -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 658 677 - -
Dapi7g00632 1319 FunFam Enhancer of mRNA-decapping protein 4 1232 1318 - -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 152 180 - -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 102 119 - -
Dapi7g00632 1319 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 416 IPR001680 GO:0005515(InterPro)
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 658 679 - -
Dapi7g00632 1319 Gene3D - 1232 1318 IPR044938 -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 33 54 - -
Dapi7g00632 1319 FunFam enhancer of mRNA-decapping protein 4 205 521 - -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 1 17 - -
Dapi7g00632 1319 SUPERFAMILY WD40 repeat-like 208 520 IPR036322 GO:0005515(InterPro)
Dapi7g00632 1319 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 36 1318 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 1 128 - -
Dapi7g00632 1319 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1190 1296 IPR049404 -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 79 97 - -
Dapi7g00632 1319 MobiDBLite consensus disorder prediction 849 874 - -
Dapi7g00632 1319 Coils Coil 896 916 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00632 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
75929 Dapi17g00870 Dapi7g00632
77592 Dapi1g00849 Dapi7g00632
80995 Dapi28g01250 Dapi7g00632
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr16:47556050 Dapi7g00632 Dapi-Chr7:13882737 dispersed
Dapi Dapi-Chr32:54667163 Dapi7g00632 Dapi-Chr7:13882737 dispersed
Dapi Dapi-Chr32:54759275 Dapi7g00632 Dapi-Chr7:13882737 dispersed
Dapi Dapi-Chr1:24807624 Dapi7g00632 Dapi-Chr7:13882737 wgd
Dapi Dapi-Chr12:101039873 Dapi7g00632 Dapi-Chr7:13882737 wgd
Dapi Dapi-Chr17:24781263 Dapi7g00632 Dapi-Chr7:13882737 wgd
Dapi Dapi-Chr28:89988042 Dapi7g00632 Dapi-Chr7:13882737 wgd
Dapi Dapi-Chr32:54387453 Dapi7g00632 Dapi-Chr7:13882737 wgd