AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00710 ATGATGAATTCTTTGCCTAAGGTTTTGATGGTTCTTAAGGTTTTGAAGGAACAAGGGTTAATATTGGCTGCGCTGCTTGGTCTGTCTGCATTTTTTTCAATGGCTGAGACTTCAATTACCACTCTTTGGCCTTGGAAGGTTAGAGAGTTGGCTGAGAAAGAGTCTGAGAATGGTGTGTTTAAGATGCTGCGGAACGATGTTACTCGGTTCTTGACGACTATTCTTATTGGCACGACGGTTGTAAATATTGGAGCAACAGCACTAGTGACTGAAGCAGCAACTGCGATATTTGGTGAGGCAGGTGTTAGTGCAGCCACAGGAGTAATGACGGTTGCTGTTTTGTTACTCACTGAAATAACTCCAAAAAGTATAGCTGTTCATAATGCTACTGAGGTTGCAAGATTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTCTTATATCCTGTTGGAAGAGTTGTAACCTATCTCTCTATGGGAATGCTCAAGTTGCTTGGTCTCAAAGGAAGAAGTGAACCGTATGTCACTGAGGATGAACTGAAGTTGATGTTACGAGGTGCTGAATTAAGCGGGGCCATAGAAGAGGAAGAACAGGATATGATCGAAAACGTTTTAGAAATAAAAGACACGTATGTTCGTGAAGTTATGACACCTTTGGTTGATGTTGTAGCCAGTGATTCTAGTGCAACATTAGTCGATTTCCACACCTTGTGGGTCACTCATCAGTATTCAAGGGTACCGGTTTTTGAACAACGTGTTGATAATATAGTCGGTATTGCATATGCAATGGATCTATTAGACTATGTTCAGAAGGGAGACCTTCTAGAAAGTTCCACGGTGGGGGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCAATGTCGGTATGGAATCTTCTTAGAGAATTTCGCATCAGGAAGGTACACATGGCGGTTGTCTTGAACGAATATGGTGGGACCGTTGGAATTGTAACACTCGAAGATGTGGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGATTCAAAAGAGGAAATAGATAAAAAGACCGGTTATATTGTAATGAGGGCCGAAGGAATATATGATGTGGATGCAAATACTACTATTGACCAGCTCTCTGAAGACCTCAACATAAAAATGCCAGAGGGTCATCAATATGAAACAGTGTCGGGGTTTGTGTGTGAGGCGTTTGGGTACATTCCGAAGACAGGTGAGCGGATAAAAGTGGTACTTGAAAAGGAAGAAGTTGATGATGAGTATAATGAGGATGATGGCGATCGACAACATCAAAAAGAAAAGGAAAAGAACCAAGTATTTCAAATAGAGATTTTAGCAGGCAATGCTAGAAAAGTTGGTGCGGTGAGGTTTGAACGGGTGAGCCATGAGGAGGAAACGGAAGCGAAGAAGGTGGTTCCAGTAATCGTGAAAAGGAAATGGGGCGATGATGAAGATGATGTTGATGATGATGATGAAACAACTATAAGTGAGGATGATGATGTAATACCACACCATGAAATCAAGGAGGGATAA 1536 41.54 MMNSLPKVLMVLKVLKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESSTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDKKTGYIVMRAEGIYDVDANTTIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGERIKVVLEKEEVDDEYNEDDGDRQHQKEKEKNQVFQIEILAGNARKVGAVRFERVSHEEETEAKKVVPVIVKRKWGDDEDDVDDDDETTISEDDDVIPHHEIKEG 511
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00710 511 CDD CBS-pair-CorC-HlyC-assoc 212 332 IPR044751 -
Dapi7g00710 511 PANTHER HEMOLYSIN-RELATED 3 483 - -
Dapi7g00710 511 ProSiteProfiles CBS domain profile. 283 341 IPR000644 -
Dapi7g00710 511 ProSiteProfiles CNNM transmembrane domain profile. 11 197 IPR002550 -
Dapi7g00710 511 Pfam Transporter associated domain 358 461 IPR005170 -
Dapi7g00710 511 Gene3D - 353 447 IPR016169 -
Dapi7g00710 511 Pfam Cyclin M transmembrane N-terminal domain 20 197 IPR002550 -
Dapi7g00710 511 Gene3D - 191 346 IPR046342 -
Dapi7g00710 511 FunFam Magnesium-cobalt efflux protein CorC 193 343 - -
Dapi7g00710 511 Pfam CBS domain 280 335 IPR000644 -
Dapi7g00710 511 Pfam CBS domain 212 270 IPR000644 -
Dapi7g00710 511 ProSiteProfiles CBS domain profile. 216 277 IPR000644 -
Dapi7g00710 511 SUPERFAMILY FAD-binding-transporter-associated domain-like 354 468 IPR036318 GO:0050660(InterPro)
Dapi7g00710 511 SMART CorC-HlyC-2 356 462 IPR005170 -
Dapi7g00710 511 SUPERFAMILY CBS-domain pair 199 338 IPR046342 -
Dapi7g00710 511 MobiDBLite consensus disorder prediction 482 511 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00710 K03699 magnesium and cobalt exporter, CNNM family
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Event-related genes

Select Gene_1 Gene_2 Event_name
251872 Dapi7g00710 Dapi23g00723
387265 Dapi23g00723 Dapi7g00710
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr32:83086179 Dapi7g00710 Dapi-Chr7:16187304 dispersed
Dapi Dapi-Chr23:17385481 Dapi7g00710 Dapi-Chr7:16187304 wgd