Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ecan1g02738	ATGGATGAATCTCGTAACCCATTTCTTCAATCTAATATTATCGAGTCTGCAAATAGTTATAGCTCAAGATTCAACCCTGATAAACGTGGGCGCCAGAACTTCATCGGACCTGGTTTTCCAGGGTTGAAGAAACGAGGGCATGCTCTTGGGAACCGTTCTTGGATAAAAATTGAGCAAAATGGGAGCTCAAAAGTGGTAGAGTTAGACAAGGCTACTGTAATGAGGCATTGCTCTTTACCTGCTAGAGATCTTCGTCTTTTGGATCCGCTTTTTATATATCCGTCTACAATATTAGGCCGTGAGAAGGCAATTGTGGTTAGTCTTGAGCAGATTAGATGTATAATTACAGCTGATGAGGTGTTTCTTATGAATTCATTGGACGGATCTGTAGTTCAGTACAAATCTGAATTGTGCAAGCGCCTTCAGCAAGAGAAATATCACTCGGATGACCTGCCATTCGAGTTTAGGGCATTGGAACTAGCTTTGGAGTTTACATGTCTTACTCTTGATACTCAGGTGAAAGAGTTAGAAATGGAAATTCATCCTGTGCTTGATGAACTCGCAAAATCAATAAGTACACTCAATCTTGAGCGTGTTCGTAGATTCAAAGGCCACCTTTTAGCATTGACTCAAAGGGTGCAAAAGGTCTGTGATGAAATAGAACAGCTAATGAACGATGATGGTGATATGGCTGAGATGTATTTAACTGAGAAGAAACAAAGGAATTCATGTAATGATCTATATGATCAAGTACAAGGAAGTAATCTTATCGGGCCTGGAGTGGGAATAGGATCAAAGTCTGCTCCTGTATCTCCTGTTGGGTCCTCAAGTGGTTCACAGAATTTGCAAAGGGCGTTTAGTAATGTAAGTGCACATAAGCATGGAAGTTTGTTGAGTTCATCGGTAACTGGTGAAACTGAAAACATTGATCAACTTGAGATGTTGCTGGAAGCGTATTTTGTTGGTATTGACAACACTTTAAACAAGTTGCTTTCGCTCAAGGAATATATTGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATGTTCAGAATAAGCTGATTAAGTTTGAGCTGCTCTTGACCGCTGCTACTTTTTTGGCTACTGTATTTGCTGTTGTGACAGCAGTATTTGGAATGAACTTTGAAGACGATGTTTTTGACGAGCCAAACAGATTCAATTGGGTCGTTTCTATTAGTGCAACATTATGTGGAGTCTTGTATATCTGTTTCTTGATTTATTTCAAACATAAGAAAGTTTTCCCTCTGTAG	1275	39.37	MDESRNPFLQSNIIESANSYSSRFNPDKRGRQNFIGPGFPGLKKRGHALGNRSWIKIEQNGSSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQQEKYHSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRNSCNDLYDQVQGSNLIGPGVGIGSKSAPVSPVGSSSGSQNLQRAFSNVSAHKHGSLLSSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDDVFDEPNRFNWVVSISATLCGVLYICFLIYFKHKKVFPL	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ecan1g02738	424	Pfam	Magnesium transporter MRS2-like	62	242	-	-
	Ecan1g02738	424	Gene3D	Magnesium transport protein CorA, transmembrane region	128	355	-	-
	Ecan1g02738	424	PANTHER	RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL	38	421	IPR039204	GO:0015095(PANTHER)\|GO:0015693(PANTHER)
	Ecan1g02738	424	SUPERFAMILY	Magnesium transport protein CorA, transmembrane region	361	413	IPR045863	-
	Ecan1g02738	424	CDD	Mrs2-Mfm1p-like	54	421	IPR039204	-
	Ecan1g02738	424	Gene3D	-	45	125	-	-
	Ecan1g02738	424	FunFam	Magnesium transporter MRS2-1	41	125	-	-
	Ecan1g02738	424	Gene3D	Magnesium transport protein CorA, transmembrane region	362	420	-	-
	Ecan1g02738	424	Coils	Coil	206	226	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ecan1g02738	K16075	magnesium transporter

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Ecan	Ecan-Chr1:41746565	Ecan8g02338	Ecan-Chr8:35052923	dispersed
	Ecan	Ecan-Chr1:41746565	Ecan7g00333	Ecan-Chr7:3481587	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ecan1g00270	.	12	386	MRS2 gene family	AT5G09690	74.005	0.0	551.0
	Ecan8g02338	ACH	1	442	MRS2 gene family	AT1G16010	80.313	0.0	699.0
	Ecan8g02340	.	1	442	MRS2 gene family	AT1G16010	80.313	0.0	699.0
	Ecan8g02339	.	1	443	MRS2 gene family	AT1G80900	70.47	0.0	605.0
	Ecan1g04520	.	123	459	MRS2 gene family	AT5G22830	77.515	2.37e-176	500.0
	Ecan1g04519	ACH	123	459	MRS2 gene family	AT5G22830	77.515	2.37e-176	500.0
	Ecan1g04518	.	123	459	MRS2 gene family	AT5G22830	77.515	2.37e-176	500.0
	Ecan2g03605	ACH	1	443	MRS2 gene family	AT1G80900	77.852	0.0	676.0
	Ecan3g01520	.	1	436	MRS2 gene family	AT3G58970	66.814	0.0	552.0
	Ecan4g02395	.	47	484	MRS2 gene family	AT3G19640	68.709	0.0	586.0
	Ecan4g02394	.	47	484	MRS2 gene family	AT3G19640	65.843	0.0	565.0
	Ecan5g01265	.	47	483	MRS2 gene family	AT3G19640	59.956	3.25e-174	497.0
	Ecan1g02738	.	1	421	MRS2 gene family	AT2G03620	65.349	4.89e-179	504.0
	Ecan6g02486	ACH	123	459	MRS2 gene family	AT5G22830	80.119	0.0	530.0
	Ecan7g00333	ACH	1	442	MRS2 gene family	AT1G16010	81.473	0.0	719.0
	Ecan7g02396	.	1	386	MRS2 gene family	AT5G09690	68.448	0.0	520.0