AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan1g02753 ATGTCCAACGAAAAAGATAGAGAAAACCATGTTTACATGGCTAAGCTCGCCGAACAAGCCGAACGTTATGAAGAGATGGTTGAAAGTATGAAAAGTGTTGCAAAACTAGATGTGGAACTTACTGTTGAAGAGCGCAACCTGCTTTCAGTCGGTTACAAGAATGTCATTGGTGCAAGGAGGGCATCTTGGCGTATTATGTCATCCATTGAACAGAAGGAGGAATCAAAAGCAAACGAGAGCAATGTTAACCTGATCAAGGGCTATCGCAAAAAGGTTGAGGATGAGCTTGCCAAAATTTGCAGTGACATTCTCGATATCATAGATAAGCATTTGATACCCTCTTCTGGCTCAGGGGAAGCCACTGTTTTCTACTACAAGATGAAAGGTGACTACTTCCGTTACTTGGCTGAGTTCAAGACCGACCAGGAAAGGAAGGACGCTGCTGAACAGTCCCTTAAGGGCTATGAGGCTGCTTCTGCTGCTGCAAATACAGAGCTTCCTTCAACCCACCCAATTCGTCTTGGCCTAGCTCTCAATTTCTCAGTGTTCTACTATGAAATTATGAATTCTCCTGAGAGGGCCTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCCGAGTTGGACTCCTTAAGTGAAGAATCCTACAAGGATAGCACTTTGATCATGCAGCTCTTGAGAGATAACCTCACTTTGTGGACCTCTGATTTACCTGAGGATGGAGGTGACGATAGCCAGCCCAAGGGCGAAGAATCCAAATCAGCTGAATCCGAGGAGAAGCAGCAGTAA 792 44.95 MSNEKDRENHVYMAKLAEQAERYEEMVESMKSVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKANESNVNLIKGYRKKVEDELAKICSDILDIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDAAEQSLKGYEAASAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDDSQPKGEESKSAESEEKQQ 263
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan1g02753 263 Coils Coil 195 215 - -
Ecan1g02753 263 MobiDBLite consensus disorder prediction 235 263 - -
Ecan1g02753 263 SMART 1433-4 7 248 IPR023410 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Ecan1g02753 263 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Ecan1g02753 263 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Ecan1g02753 263 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Ecan1g02753 263 MobiDBLite consensus disorder prediction 242 263 - -
Ecan1g02753 263 FunFam 14-3-3 protein epsilon 1 248 - -
Ecan1g02753 263 Gene3D - 1 246 IPR036815 -
Ecan1g02753 263 Coils Coil 145 165 - -
Ecan1g02753 263 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Ecan1g02753 263 PIRSF 14-3-3 1 251 IPR000308 -
Ecan1g02753 263 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Ecan1g02753 263 Coils Coil 13 33 - -
Ecan1g02753 263 Pfam 14-3-3 protein 13 235 IPR023410 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan1g02753 K06630 14-3-3 protein epsilon
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
83077 Ecan1g02753 Ecan4g02026
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr1:41849421 Ecan5g01688 Ecan-Chr5:30679619 dispersed
Ecan Ecan-Chr1:41849421 Ecan4g02026 Ecan-Chr4:31378170 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan1g01369 . 200 247 14-3-3 family AT1G35160 60.417 6.98e-12 58.2
Ecan2g01184 . 1 256 14-3-3 family AT1G78300 85.214 1.35e-161 446.0
Ecan2g02100 . 7 152 14-3-3 family AT3G02520 31.081 8.80e-09 53.5
Ecan2g01309 ACH 4 247 14-3-3 family AT5G10450 75.0 1.73e-137 385.0
Ecan2g02678 ACH 3 252 14-3-3 family AT5G38480 88.4 1.33e-167 461.0
Ecan3g02197 ACH 2 263 14-3-3 family AT2G42590 75.954 5.34e-148 412.0
Ecan4g02026 ACH 6 256 14-3-3 family AT1G26480 85.657 2.43e-163 451.0
Ecan5g01688 ACH 1 263 14-3-3 family AT2G42590 77.567 2.63e-152 423.0
Ecan6g01890 ACH 3 254 14-3-3 family AT3G02520 88.492 7.21e-165 455.0
Ecan6g01455 . 2 256 14-3-3 family AT1G78300 87.109 2.17e-163 451.0
Ecan7g01386 ACH 3 258 14-3-3 family AT1G78300 87.109 7.38e-164 452.0
Ecan1g02753 ACH 6 267 14-3-3 family AT1G26480 82.443 4.00e-162 448.0
Ecan7g01455 ACH 4 247 14-3-3 family AT5G10450 84.016 5.66e-155 429.0
Ecan8g03328 . 6 256 14-3-3 family AT2G42590 77.778 7.03e-142 397.0
Ecan8g01457 . 1 248 14-3-3 family AT1G34760 54.545 1.11e-90 271.0
Ecan8g03327 . 9 243 14-3-3 family AT1G26480 66.949 1.78e-113 327.0
Ecan8g01438 ACH 1 266 14-3-3 family AT1G35160 79.775 2.81e-157 436.0