AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00004 ATGAATAATGGAGGAGATGTTCACAAGGTATGGGAGATCAGAACCTTAAAGAAGAAGGTTGGAGCAGACGAGGCTCGCAAGTTCCTTGAAAGAATCGCCAAACAGGTTCAACCCATCATGCGGAAACATAATTGGAGAGTCAAAGTTCTTTCTGAAATGTGTCCTAAAAACCCGCGGCTTTTGGGGCTGAACGTGGGACATGGTATTCATGTAAAGCTCAGACTTCGAAGACCGAATACAGATTGGGACTTTTACCCGTTTGATCAAGTTCTTGATACGATGCTTCATGAACTGTGTCATAACTCTATTGGTCCCCATAATGTCGCTTTCTATAAACTCTGGGATGATCTTAGGAAGGAATGTGAGGAGTTTATGAGTAAAGGAATTACTGGGTCTGGTGACGGGTTTGATCTTCCCGGTAGACGTTTAGGTGGCTTCACTCGACAACCACCCCTTTCGTCTCTCCGCCAGACTGCACTTGTTGCCGCTCAAAATAGAGCCCGTTTGGGATCTCTTTTACCAGCTGGCCCTAAACGCCTTGGTGGCGATAAATCTATTATGTCTTCCCTGACTCCCGGACAAGCAGCTGCGATGGCTGCAGAAAGGAGATTACAGGACGACATATGGTGTGGCATACAGCAACTAGTCGAAGAGGAAGAAGAAACTGTGCCACAAAGCTCGGCTTCCTCTAGTGTTCTAGGTTCCAAAAGAAGTCACCAATCAAATGATAGTCATTCAGAACTAAATTTTGTTGACTTGACGGATGTTCCCTCGGTATCCAATGCAGAAGCTACAAACAACATTTCCGTAAATAAAAGAAGTCGGCAAACAGAATGTTGTATTGATTTAACAACTGAAGACTTTGCTAGCGGATCTACTAGCAATGAAAAAACAGGACGTGACACAAAGTCTTCCGGGTGGGAGTGCATGACATGCACATTGTTGAATCCGCCATTGGCTCCAATATGCGAGCTTTGTGGAACCCTCAAGCCAAAAGCAGAGGAGAAGTACAAGTCATGGTCATGCAAATTTTGTACAATGGTAAACACTGTGAAGATGGAGAAATGTGGAGCATGTGAGCAGTGGAGATATTCTCATGGCCAGCCCATAGCAACCCCATCACCAAATGTTGGTACTTAA 1140 44.82 MNNGGDVHKVWEIRTLKKKVGADEARKFLERIAKQVQPIMRKHNWRVKVLSEMCPKNPRLLGLNVGHGIHVKLRLRRPNTDWDFYPFDQVLDTMLHELCHNSIGPHNVAFYKLWDDLRKECEEFMSKGITGSGDGFDLPGRRLGGFTRQPPLSSLRQTALVAAQNRARLGSLLPAGPKRLGGDKSIMSSLTPGQAAAMAAERRLQDDIWCGIQQLVEEEEETVPQSSASSSVLGSKRSHQSNDSHSELNFVDLTDVPSVSNAEATNNISVNKRSRQTECCIDLTTEDFASGSTSNEKTGRDTKSSGWECMTCTLLNPPLAPICELCGTLKPKAEEKYKSWSCKFCTMVNTVKMEKCGACEQWRYSHGQPIATPSPNVGT 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00004 379 ProSitePatterns Zinc finger RanBP2-type signature. 307 326 IPR001876 -
Ecan3g00004 379 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 3 378 IPR053000 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008237(PANTHER)
Ecan3g00004 379 ProSiteProfiles Zinc finger RanBP2 type profile. 303 332 IPR001876 -
Ecan3g00004 379 ProSitePatterns Zinc finger RanBP2-type signature. 340 359 IPR001876 -
Ecan3g00004 379 Pfam WLM domain 9 204 IPR013536 -
Ecan3g00004 379 MobiDBLite consensus disorder prediction 219 247 - -
Ecan3g00004 379 ProSiteProfiles WLM domain profile. 1 205 IPR013536 -
Ecan3g00004 379 ProSiteProfiles Zinc finger RanBP2 type profile. 336 365 IPR001876 -
Ecan3g00004 379 Gene3D - 300 339 - -
Ecan3g00004 379 SMART zf-4 305 329 IPR001876 -
Ecan3g00004 379 SMART zf-4 338 362 IPR001876 -
Ecan3g00004 379 SUPERFAMILY Ran binding protein zinc finger-like 303 330 IPR036443 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00004 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]