AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00019 ATGGGTATTATGGGTGAAATATGCAGTGCGATAAATGAAATCGACGGCAAGAAACAAAAGCTCCGGGAATCATTGAAACACCTCCTCCTTGTTCTTCAATCAAATAGTAGTGATAGTGTGGCGAGGAATCTGAAATGGGAGGATTTGGATTCATACTTGAAAAAACTCGAGTCCTCTCTCCAAACTAAATACAATCTCCTCCTCCGCCACCAATCCCCAGTAGAAGAAAGGAGTACGGAATTGAAACGTTTATGTGAGAATTCAGATGGTTTAGGGTTAAAACAGTTTGTTGTTACTATTACTAGTAGTGAAAGTGAATCCGCTCCTGCTGATCCACTTTCAATTTTGGTTGAGGCTTTCACCCGCTATGCACCTCATACTGCACCCGCTATGGTTCTCGACTCGATTTCACTGGATCAATTCCACCCCTCTTCTCCTCTGGTTATTATGTTGCAAGCTCTGATACGTTTTATGCAAAACCAACCACCTGAACCTGCAGACATTGAATCATTAAAGGATAAGGCTATGCAGGTTGCCCTCCAATTGAGGACTTGTAGTTCTTCTTCATTGGGTTTTTTGCTTCTTGTCAAGGCCTATGGTTTGATTCACCGATTTGACAACCACCTTGTTATCGATTCCTTTATCATTCTTGCCCAAACACTGCCTTCCCATGCTATCCATCTTTGTCCACAACTTCTTACTCCGAATCACATCAATGATCTTATTCAGAAACTCATTGATAAAGGCATGCATATTACTGCTGTCAATTTTAGCCTTCAGCTTCACACGACCGATCGTTTTCCACCGGTTCGTCTCTTGGAAGAGCGCAAGTTAATGTCTACTACGGCTATTGAGGAGGCACTCCACGATGTAGAAGCTTGTAATGAGGTCATGCTGAGAGAAATCGGCACATTAAAGGCCATTATCAAATGCGTTGATGAAAATCACCTGCACACAGAGTACCCAAAGGATAGTGTGGTTGAACTTGTTAACAAACTCGAGAATGAGGCGGAAAATGCCAAACAACATCTTGTAAAGAAACTAAGGAACGATGATCCTGGTAGCAAAAAACGACCAGCAATAGCACGTGTATCCAAGAAGAAGCTGCTGTCAAAGACAAAGAAACCAAAACAAGACAAATTTCTTCAAACTGCAGCATCTGCAGAACCACAGAATGCCATGCCGGCTGAAGAACCTCATTCACAGGCATCAGATTTGTTGACAGGCCATATTGATCAATACCACAGTTCTTCATGTGGCTCTGATCCCACTGCTCCATATACCGCCCCAGCAAGTCCTTGTGAGTTGGCAAGAGCAAATAGCGGTCACAGTGGCAATCTGATGCCTGTTGATAAGGAGACTGGCCTTTGTGTTTCACAGTCACACCCTCCATCTTGTTACAATTCAAATGGTTGGATATCGGAATAA 1428 43.0 MGIMGEICSAINEIDGKKQKLRESLKHLLLVLQSNSSDSVARNLKWEDLDSYLKKLESSLQTKYNLLLRHQSPVEERSTELKRLCENSDGLGLKQFVVTITSSESESAPADPLSILVEAFTRYAPHTAPAMVLDSISLDQFHPSSPLVIMLQALIRFMQNQPPEPADIESLKDKAMQVALQLRTCSSSSLGFLLLVKAYGLIHRFDNHLVIDSFIILAQTLPSHAIHLCPQLLTPNHINDLIQKLIDKGMHITAVNFSLQLHTTDRFPPVRLLEERKLMSTTAIEEALHDVEACNEVMLREIGTLKAIIKCVDENHLHTEYPKDSVVELVNKLENEAENAKQHLVKKLRNDDPGSKKRPAIARVSKKKLLSKTKKPKQDKFLQTAASAEPQNAMPAEEPHSQASDLLTGHIDQYHSSSCGSDPTAPYTAPASPCELARANSGHSGNLMPVDKETGLCVSQSHPPSCYNSNGWISE 475
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00019 475 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 76 398 - -
Ecan3g00019 475 Pfam Frigida-like protein 77 343 IPR012474 -
Ecan3g00019 475 Coils Coil 323 350 - -
Ecan3g00019 475 MobiDBLite consensus disorder prediction 360 374 - -
Ecan3g00019 475 MobiDBLite consensus disorder prediction 343 381 - -
Ecan3g00019 475 MobiDBLite consensus disorder prediction 343 359 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00019 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:110146 Ecan3g00959 Ecan-Chr3:20318122 dispersed
Ecan Ecan-Chr3:110146 Ecan3g00958 Ecan-Chr3:20318122 transposed