AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00023 ATGAATACCAAAAAGCTTCGGACACCTGCTGAGGTGGTTCAAAAGACCCGATCCCTTCTCCTTTATTCCAAAGATACTGCTAGTGCTGGCTCCCAGACAGCAGAGTTGAACTCACTTATTAAAGAATTAAAGTTAATTCTTTATGGTAATGATGACTCTGAGCCTTCTGAGGAAGCTTGTGCACAACTGAGTGAAGAGTTCTTCAAAGAGGACACATTGCGTCTCCTCATTATATTTCTTCCAAGGCTGAACTTGGAGGCCCGTAAAGATGCCACTCAGGTTGTCACGAGTTTGCAAAGGCAACCTTTGCCATCACGCTTCCAGGCTTCTAGATATCTGGAAGCTAATCTAGATCTTATAGACATCCTGATATCCGGGTATGAGGATCCTCAGTTAGCACTCCATTATGGTAGGATGTTAAAGGAATGCCTACGTCATCAAATTGTTGCAAGTTACTTACTGGAACCAAATCAGTTGAAGAAACTTTTTGGTTACATAAAACATCCCAGTTTTGATATTGCTGCAGATGCTGCAGATGCCTTCAAGGATCTTTTGACTAGGCATAAGTCAACTGTCTCTGGATCTTTGTCCAAGAATTATATTTGGTTTTTTACTGAATTTAATGAAAAACTACTGAAATCTCCAAATTATATCACCAGAAGACAGGCTGTCAAGTTACTGGGATGCATATTACTAGATCGTTCGAATTCTTGTGTTATGACGCGTTATGTCAACTCAAAAGAGAACCTAATGATCCTAATGAATCTTTTACGGGATACTAGTAGGAGCATCCAGATAGATGCTTTTCATGTGTTCAAGCTTTTTGTAGCTAATGAAAACAAGCCTCCAGAAATAGCTAGCATACTTGTTACAAACAGAAGCAAGCTTGTGCGATTGTTAGGCGCCTTTGTGCAAACAGACGATGAAATGTTTGAGACAGACAAAGTCCAGGTGGTTAATGAACTCGCTGTGCTGGAGTTACAAGATTACAGCTACAGATCATGA 1005 40.3 MNTKKLRTPAEVVQKTRSLLLYSKDTASAGSQTAELNSLIKELKLILYGNDDSEPSEEACAQLSEEFFKEDTLRLLIIFLPRLNLEARKDATQVVTSLQRQPLPSRFQASRYLEANLDLIDILISGYEDPQLALHYGRMLKECLRHQIVASYLLEPNQLKKLFGYIKHPSFDIAADAADAFKDLLTRHKSTVSGSLSKNYIWFFTEFNEKLLKSPNYITRRQAVKLLGCILLDRSNSCVMTRYVNSKENLMILMNLLRDTSRSIQIDAFHVFKLFVANENKPPEIASILVTNRSKLVRLLGAFVQTDDEMFETDKVQVVNELAVLELQDYSYRS 334
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00023 334 SUPERFAMILY ARM repeat 7 323 IPR016024 -
Ecan3g00023 334 Gene3D - 5 326 IPR011989 -
Ecan3g00023 334 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 4 327 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Ecan3g00023 334 Pfam Mo25-like 4 325 IPR013878 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00023 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:140552 Ecan4g00661 Ecan-Chr4:13962997 dispersed
Ecan Ecan-Chr3:140552 Ecan5g01563 Ecan-Chr5:29386650 transposed