AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ecan3g00031 | ATGGCTTATTTCGACGGCGACGAAGGAGCTCTTCGAAACGTCGTATCCAATTACTATTTTAACGGTGCAGATGATGAACCCGTTTCTTTTGCACCATTACCTGTCAAATGGGGTACTTATGACATTTTATATCACAACAAAAACCTCCATATCTATCTAAGGGGCACTACCGATAACGGTCTTCAAAAGGTACATAAGCAAGTCAAAGCATGGACCTTTGATCTTTCCAAACCAAAAAAACCCCAGATTTCAGTTCTCTCCAAAGACAACACTTGGATCAACCTTCTCAAACCTCGCAAGAGTTACGTGTCTGAGATACGCACAATTCTTGTCACTCTGCATTCTCTTCATTTTTTCAAGACACAACCCAAAGCATCTGCCAAACCTCTATGGGACCATCTCTCTAAAGTTTTCAGCTACTATGACATCAGGCCCTCAGAGAAAGATCTCCTAGAGCATCTTAATTTCATTGGGGAAGCTGTCAAAAGGGACATAACGTTAGGAAGATCCAAGTTTTTGGCTTCGTTACTGGAGGAGAGTCCCAGAAAGAAGAGAACTTTTGATCAGAATGCAGACGGTATGGATGATGATGAATACGAGTATGGTGAACTCACCACACAAAACACTGAAGACAGCGAGTCTGATGACGAGAACAATGATGATGATGATGATGATGACGGTTACGATAACGTTTGTGCATTATGTGATAATGGTGGTGATCTCACCTGTTGTGAAGGGAAATGTTTTAGGGCATTTCACGCAACTCTCGAATCTGCAGGCCCCAATTGCAAATCTCTTGGTCTATCTGCTGAAGAAGTAAAGGGAAGAGAACCATGGTTGTGCTTGAACTGTTCTCATCAACAACACCAGTGCTTCGTTTGCGGAAACCTTGGGTCTTCCAATAAATCTTCTGGGGCAGAGGTTTTCTGCTGTAGCTGTACAACCTGTGGCCATTTTTATCATCCAGAATGTGTTGCACAGTTGCTTGAGGACAAAAGTGACACCAGAGCACACATTCTTCAAAAAAAGATTGCTGCTGGTGAGCCGTTCACATGTCCTGCACACAAATGCCATAAGTGTAAAGAGGGAGAAAATGAGAAGATAAAAGGCTTGCAATTTGCTATTTGCAGACGATGTCCAAGGTCGTACCACAGACGATGCTTGCCGAGCAAAATTCTGTTTGATAAGAAAGATGTTGTAGCTAGGGCATGGGATGGACTTTTGCCTAAATCACGCGCATTAATATATTGTTTAAAACATGAGATAGACCCTAAACTTCGCACTGCTGTAAGTAGCGTGAAGTTTCCCCAAATTTTTAGCCATAGCAAGAAGAAAGTTGCTCTGAGTGAGGAAGTTCTGAATACTGATTATACATCTAATGAGAGAATAGTTAAAAGATCTTGTCCATCTACTAGACCCATAGAGTGTTCCAGAAAGAGGGTGACAGTGTCATCTGGGTCAAAACCCGTGAAGAAACAAAGGGTAATCAATAACTCCAATATATCTTCAAAAAACAATCTTATAATGGAAGTTGAGAGGCCTAAACTGGATGATAACCGATCTTCTAAGAAGGATGACATTTGGGGTGAAAAAGATGGGCAAACCCTGAAATCCGCTTCATGTGAGAGGATAGTGACATTGATGAAAGAAGCTGCCTCAATTACACCAGATAAGGATAAGCTACATGGGATGGGATATACATTCTTTGGTCGCCATTTTGCAAAAGTTGAAAAGCTGGAAGAGATTATTGGAAGACTTAGTTGGTATGTCGAAGATGGTGATACGATAGTTGATCTATTCTGTGGAGCAAATGATTTCATCCGCCTCATGAAAAAGCAGCTTGATGAGATGGGGATGTCATGCTCGTATAAAAATTATGACATTACCTGCCCAGAGAGTGAGTTTTACTTTGAGAATACGGATTGGATGAACGCTCTTTCCAAGGAATTGCCTTGTGGATCACGCTTGATTATTGGACTAAATCCTCCATTGAGAAAGAGTGCCTCTCTTTTAAACCTTTTTATAGACCAAGCGCTTCTGATTAAGCCGAAGCTTATCATTCAATTTGTTTCCCCAGGGACTAAAAGGTTAGATGACGAAGATTTAAGAACTCCATATGATCTGGTTTGGGAGGATGCAAAATTGCTAGCTGAGAAGTCTGTTTATCTCCCTGGATCAGTTGAAGTGAATGAGAAGCAAATGGATCAATGGAATGACAATCCGCCAGCATTATATCTTTGGAGTCGTCCAGATTGGACTGGCAAGCATATAACCGTTGCTCAGCAGCATGGCCATGTATCCAAACTACAAGAAGCTCATGAAAAGAAAGCCTTGGTGGATAACCATGACTTAAATAATCCACTTCTCATGAGAAGCCCGAAAGAAAGCTCGCAATGTGATAATGATAAATCTCTATCTTGTGAGACCCCATTTTTGGATATTCAGTTTCCGCATACAGAGAAGAAATCCCCGTCTTCTCATCAATCTCAAGTTCATGAAACTCGAAACTCGGATATGTCAACGGGACATGATTCGAAGCTTCCATCCCCTGTCCCTTATCACTCTCGAGATCCGGAGACTCCAGACTCGGGTGTTGACCTTATGAAGAACCAGGCGCCGTGTAGATCCTGTTCTCATCACAACATTGCCAACAGGGGTCATTATATAGGTGCACTATACATGTGGCCGAATGTTGTCAGAATTCCTTGTTATGAAAGGGAAATCGTAGAGTGTCATGGTTATGGTAGGGAGGCTTATGTTGGGGAGGGATCGAACCACAGACTAGATTCTTCTATGCGTCAAAGGTTTGTGAATGGCAGGGGTCATTGTGAGGCAGGGCATTCAGCTTATTATACGCTTGCAGATCAATCATCATGTAACAGGTCTAGCACATCTGTGATACAACGATATGCACCTAGACTGGATGATTTAAACCACTTGTGGATGCTTCATGTACATGGGCCACATATGGACGCTTCTGGTTATGGCCCTGGCCCACACCAGCCCTTTTCACACCAAAAGTCGTCGTAG | 3030 | 42.38 | MAYFDGDEGALRNVVSNYYFNGADDEPVSFAPLPVKWGTYDILYHNKNLHIYLRGTTDNGLQKVHKQVKAWTFDLSKPKKPQISVLSKDNTWINLLKPRKSYVSEIRTILVTLHSLHFFKTQPKASAKPLWDHLSKVFSYYDIRPSEKDLLEHLNFIGEAVKRDITLGRSKFLASLLEESPRKKRTFDQNADGMDDDEYEYGELTTQNTEDSESDDENNDDDDDDDGYDNVCALCDNGGDLTCCEGKCFRAFHATLESAGPNCKSLGLSAEEVKGREPWLCLNCSHQQHQCFVCGNLGSSNKSSGAEVFCCSCTTCGHFYHPECVAQLLEDKSDTRAHILQKKIAAGEPFTCPAHKCHKCKEGENEKIKGLQFAICRRCPRSYHRRCLPSKILFDKKDVVARAWDGLLPKSRALIYCLKHEIDPKLRTAVSSVKFPQIFSHSKKKVALSEEVLNTDYTSNERIVKRSCPSTRPIECSRKRVTVSSGSKPVKKQRVINNSNISSKNNLIMEVERPKLDDNRSSKKDDIWGEKDGQTLKSASCERIVTLMKEAASITPDKDKLHGMGYTFFGRHFAKVEKLEEIIGRLSWYVEDGDTIVDLFCGANDFIRLMKKQLDEMGMSCSYKNYDITCPESEFYFENTDWMNALSKELPCGSRLIIGLNPPLRKSASLLNLFIDQALLIKPKLIIQFVSPGTKRLDDEDLRTPYDLVWEDAKLLAEKSVYLPGSVEVNEKQMDQWNDNPPALYLWSRPDWTGKHITVAQQHGHVSKLQEAHEKKALVDNHDLNNPLLMRSPKESSQCDNDKSLSCETPFLDIQFPHTEKKSPSSHQSQVHETRNSDMSTGHDSKLPSPVPYHSRDPETPDSGVDLMKNQAPCRSCSHHNIANRGHYIGALYMWPNVVRIPCYEREIVECHGYGREAYVGEGSNHRLDSSMRQRFVNGRGHCEAGHSAYYTLADQSSCNRSSTSVIQRYAPRLDDLNHLWMLHVHGPHMDASGYGPGPHQPFSHQKSS | 1009 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ecan3g00031 | 1009 | CDD | PHD2-NSD | 290 | 355 | - | - | |
| Ecan3g00031 | 1009 | CDD | PHD3-NSD | 357 | 420 | - | - | |
| Ecan3g00031 | 1009 | MobiDBLite | consensus disorder prediction | 819 | 844 | - | - | |
| Ecan3g00031 | 1009 | MobiDBLite | consensus disorder prediction | 817 | 863 | - | - | |
| Ecan3g00031 | 1009 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 14 | 139 | IPR022702 | - | |
| Ecan3g00031 | 1009 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB-G0268158 | 1 | 554 | - | - | |
| Ecan3g00031 | 1009 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 222 | 286 | IPR013083 | - | |
| Ecan3g00031 | 1009 | SMART | PHD-3 | 231 | 285 | IPR001965 | - | |
| Ecan3g00031 | 1009 | SMART | PHD-3 | 290 | 356 | IPR001965 | - | |
| Ecan3g00031 | 1009 | SMART | PHD-3 | 357 | 421 | IPR001965 | - | |
| Ecan3g00031 | 1009 | MobiDBLite | consensus disorder prediction | 205 | 224 | - | - | |
| Ecan3g00031 | 1009 | MobiDBLite | consensus disorder prediction | 784 | 803 | - | - | |
| Ecan3g00031 | 1009 | Pfam | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger | 287 | 355 | - | - | |
| Ecan3g00031 | 1009 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 287 | 378 | IPR013083 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ecan3g00031 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 84443 | Ecan3g00031 | Ecan8g02521 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ecan | Ecan-Chr3:198757 | Ecan5g01545 | Ecan-Chr5:29240451 | dispersed | |
| Ecan | Ecan-Chr3:198757 | Ecan8g02521 | Ecan-Chr8:36419032 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ecan8g02533 | ACH | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 27.82 | 8.37e-09 | 57.0 | |
| Ecan8g00870 | . | 39 | 264 | PHD Transcription Factor family | AT5G57380 | 23.413 | 1.29e-08 | 56.6 | |
| Ecan8g00565 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 33.333 | 4.34e-07 | 53.1 | |
| Ecan9g02622 | . | 171 | 255 | PHD Transcription Factor family | AT3G53680 | 36.471 | 5.96e-08 | 50.4 | |
| Ecan9g00205 | . | 345 | 975 | PHD Transcription Factor family | AT5G58610 | 31.186 | 2.64e-84 | 283.0 | |
| Ecan9g00206 | . | 569 | 973 | PHD Transcription Factor family | AT5G58610 | 35.87 | 1.31e-74 | 261.0 | |
| Ecan9g00487 | ACH | 10 | 416 | PHD Transcription Factor family | AT5G58610 | 32.019 | 1.26e-55 | 199.0 | |
| Ecan9g01169 | . | 130 | 272 | PHD Transcription Factor family | AT5G57380 | 27.778 | 1.76e-07 | 52.4 | |
| Ecan9g02767 | ACH | 111 | 973 | PHD Transcription Factor family | AT2G36720 | 40.712 | 0.0 | 629.0 | |
| Ecan9g00488 | . | 663 | 1064 | PHD Transcription Factor family | AT5G58610 | 40.835 | 8.62e-99 | 317.0 | |
| Ecan1g02396 | . | 15 | 672 | PHD Transcription Factor family | AT5G22260 | 50.222 | 0.0 | 641.0 | |
| Ecan1g04294 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 86.061 | 8.68e-87 | 293.0 | |
| Ecan1g04540 | . | 225 | 973 | PHD Transcription Factor family | AT2G36720 | 45.144 | 0.0 | 660.0 | |
| Ecan2g02765 | ACH | 649 | 719 | PHD Transcription Factor family | AT5G36670 | 37.333 | 6.82e-07 | 52.4 | |
| Ecan2g01271 | . | 1 | 504 | PHD Transcription Factor family | AT2G18880 | 36.245 | 7.25e-88 | 279.0 | |
| Ecan2g03172 | . | 668 | 751 | PHD Transcription Factor family | AT5G58610 | 35.227 | 4.71e-08 | 54.7 | |
| Ecan1g01428 | . | 318 | 409 | PHD Transcription Factor family | AT5G22260 | 40.206 | 8.09e-09 | 57.4 | |
| Ecan2g01279 | . | 731 | 973 | PHD Transcription Factor family | AT5G58610 | 41.132 | 3.18e-52 | 181.0 | |
| Ecan2g01582 | . | 521 | 973 | PHD Transcription Factor family | AT5G58610 | 36.57 | 1.87e-77 | 265.0 | |
| Ecan2g01581 | . | 521 | 973 | PHD Transcription Factor family | AT5G58610 | 36.57 | 1.87e-77 | 265.0 | |
| Ecan3g03149 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 23.49 | 9.21e-07 | 51.2 | |
| Ecan3g03151 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 23.49 | 9.35e-07 | 51.2 | |
| Ecan3g03150 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 23.49 | 9.74e-07 | 50.8 | |
| Ecan3g00031 | ACH | 721 | 801 | PHD Transcription Factor family | AT3G14980 | 30.392 | 2.27e-06 | 50.1 | |
| Ecan3g01228 | . | 318 | 984 | PHD Transcription Factor family | AT4G14920 | 48.737 | 0.0 | 651.0 | |
| Ecan3g01227 | . | 318 | 984 | PHD Transcription Factor family | AT4G14920 | 48.737 | 0.0 | 651.0 | |
| Ecan3g00968 | . | 611 | 973 | PHD Transcription Factor family | AT5G58610 | 39.609 | 2.56e-75 | 256.0 | |
| Ecan1g02436 | . | 17 | 406 | PHD Transcription Factor family | AT5G22260 | 30.0 | 1.35e-52 | 194.0 | |
| Ecan3g02987 | ACH | 311 | 966 | PHD Transcription Factor family | AT1G05380 | 43.304 | 1.52e-176 | 549.0 | |
| Ecan3g00533 | ACH | 3 | 339 | PHD Transcription Factor family | AT4G30200 | 50.294 | 3.15e-92 | 293.0 | |
| Ecan3g02203 | ACH | 510 | 1056 | PHD Transcription Factor family | AT3G14980 | 51.171 | 0.0 | 563.0 | |
| Ecan3g00381 | . | 26 | 976 | PHD Transcription Factor family | AT5G58610 | 35.608 | 0.0 | 597.0 | |
| Ecan3g00382 | ACH | 26 | 1045 | PHD Transcription Factor family | AT5G58610 | 34.739 | 0.0 | 598.0 | |
| Ecan3g00383 | . | 26 | 1028 | PHD Transcription Factor family | AT5G58610 | 34.705 | 0.0 | 598.0 | |
| Ecan4g00332 | . | 352 | 987 | PHD Transcription Factor family | AT4G14920 | 52.648 | 0.0 | 702.0 | |
| Ecan4g02745 | ACH | 7 | 1025 | PHD Transcription Factor family | AT3G14980 | 41.604 | 0.0 | 736.0 | |
| Ecan4g01499 | . | 130 | 247 | PHD Transcription Factor family | AT5G57380 | 25.373 | 2.01e-10 | 63.2 | |
| Ecan4g02879 | . | 46 | 597 | PHD Transcription Factor family | AT3G24440 | 48.187 | 6.20e-171 | 497.0 | |
| Ecan4g02880 | . | 46 | 597 | PHD Transcription Factor family | AT3G24440 | 48.187 | 6.20e-171 | 497.0 | |
| Ecan4g01744 | . | 130 | 264 | PHD Transcription Factor family | AT5G57380 | 26.623 | 1.72e-10 | 62.4 | |
| Ecan4g00244 | . | 15 | 661 | PHD Transcription Factor family | AT5G22260 | 33.234 | 7.83e-110 | 343.0 | |
| Ecan5g00781 | . | 354 | 996 | PHD Transcription Factor family | AT4G14920 | 52.896 | 0.0 | 698.0 | |
| Ecan5g01255 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 28.902 | 2.16e-12 | 68.6 | |
| Ecan5g00762 | . | 145 | 261 | PHD Transcription Factor family | AT5G57380 | 33.077 | 4.39e-09 | 57.0 | |
| Ecan5g01934 | ACH | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 29.927 | 8.02e-09 | 56.6 | |
| Ecan5g01697 | ACH | 566 | 1033 | PHD Transcription Factor family | AT3G14980 | 55.672 | 0.0 | 555.0 | |
| Ecan5g01696 | ACH | 566 | 1027 | PHD Transcription Factor family | AT3G14980 | 55.957 | 0.0 | 555.0 | |
| Ecan5g00539 | ACH | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 45.989 | 5.73e-176 | 515.0 | |
| Ecan1g03533 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 7.94e-07 | 51.2 | |
| Ecan5g03133 | . | 81 | 662 | PHD Transcription Factor family | AT5G22260 | 32.02 | 2.09e-85 | 281.0 | |
| Ecan6g00707 | . | 172 | 301 | PHD Transcription Factor family | AT3G53680 | 55.385 | 4.00e-40 | 150.0 | |
| Ecan1g00362 | . | 189 | 1595 | PHD Transcription Factor family | AT5G12400 | 38.397 | 0.0 | 901.0 | |
| Ecan6g02676 | . | 40 | 831 | PHD Transcription Factor family | AT3G53680 | 49.94 | 0.0 | 816.0 | |
| Ecan1g00619 | . | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 35.802 | 1.38e-07 | 54.7 | |
| Ecan6g01633 | . | 27 | 169 | PHD Transcription Factor family | AT5G58610 | 23.776 | 3.08e-07 | 47.0 | |
| Ecan7g01989 | ACH | 684 | 1027 | PHD Transcription Factor family | AT5G58610 | 44.118 | 1.02e-87 | 299.0 | |
| Ecan7g02447 | ACH | 312 | 957 | PHD Transcription Factor family | AT1G05380 | 43.053 | 2.55e-165 | 531.0 | |
| Ecan1g04155 | ACH | 515 | 973 | PHD Transcription Factor family | AT2G36720 | 38.661 | 3.11e-106 | 335.0 | |
| Ecan1g04156 | . | 691 | 973 | PHD Transcription Factor family | AT2G36720 | 42.857 | 4.91e-77 | 256.0 | |
| Ecan1g01593 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 36.25 | 1.96e-22 | 100.0 | |
| Ecan8g03182 | . | 679 | 760 | PHD Transcription Factor family | AT4G14920 | 33.333 | 8.01e-07 | 52.0 | |
| Ecan1g03361 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 29.197 | 1.63e-09 | 57.0 | |
| Ecan8g02521 | ACH | 719 | 807 | PHD Transcription Factor family | AT3G14980 | 30.357 | 3.13e-07 | 53.5 |