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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00042 ATGTCTTCTGCGATGTATTCTACCTTGCGTGGCACCACACTTGCTCTTAATTATAGCAAGAACTCTGCTGATGATTCCATTAAGTCCGGTTTCTTGAGTAAAAAGCAGACACTGCATTTTAAGAACTATCTGTCAGCTAATACTCAAAGGCTGGATAGAATTCAATGTAGGGCGTTAGAGGTGGAAACTGTCCGAACCTTTTTGAAGGGAGACAAATTTGAACTACATGATGTTATTGAAGCACAACAATTTGATAGAGATATACTCAGTGCAGTATTTGAAGTCGCACGTGAAATGGAAACCATTGAGAAGAAGTCACGTGGAAGCCAGATTCTCAATGGTTTCTTAATGTCTACTCTCTTTTACGAGCCTTCTACTAGGACTAGACTTTCATTTGAGTCGGCGATGAAAAGGTTAGGTGGTGAAGTGTTGACAACGGAAAACGCACGAGAGTTCTCTTCTGCTGCAAAAGGAGAAACACTGGAAGATACGATTAGAACCGTGGAAGGGTATTCAGATATAATCGTGATGAGGCACTTTGAAAGTGGTGCTGCTAGAAGAGCAGCACTGACAGCTAATATTCCTGTTATTAATGCTGGTGATGGGCCAGGTCAGCATCCTACTCAGGCTCTTCTTGATGTGTACACTATTGAAAGAGAGATAGGAAAGCTGGATGGGATTAAGGTTGCACTTGTTGGGGATCTTGCTAACGGCCGAACAGTTCGCTCCCTTGCATATCTTCTAGCCAAGTATAATAACGTGAAAATTTACTTTGTTTCACCTGAGGTTGTAAAGATGAAGGAGGACATTAAAGAGTACTTAACATCAAAGGGAGTGGAATGGGAAGAAAGTGCAGATCTAAAGGAAGTAGCATTGAAGTGTGACGTGGTGTATCAAACGCGCATACAGAGAGAGCGTTTTGGTGAGAGAACTGATCTCTATGATGCAGCCCGTGGCAAATACATTATTGATCGTGATGTCTTGGCTGTCATGCAGAAGCATGCTATTGTCATGCATCCTCTCCCAAGGCTTGATGAGATAACGGTGGATGTCGATGACGATCCTAGGGCTGCCTACTTTAGACAAGCAAAAAATGGACTCTTCATTAGAATGGCTTTGTTGAAGCTCTTACTTCTTGGTTGGTGA 1146 42.5 MSSAMYSTLRGTTLALNYSKNSADDSIKSGFLSKKQTLHFKNYLSANTQRLDRIQCRALEVETVRTFLKGDKFELHDVIEAQQFDRDILSAVFEVAREMETIEKKSRGSQILNGFLMSTLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAALTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVALVGDLANGRTVRSLAYLLAKYNNVKIYFVSPEVVKMKEDIKEYLTSKGVEWEESADLKEVALKCDVVYQTRIQRERFGERTDLYDAARGKYIIDRDVLAVMQKHAIVMHPLPRLDEITVDVDDDPRAAYFRQAKNGLFIRMALLKLLLLGW 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00042 381 NCBIfam aspartate carbamoyltransferase 77 378 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Ecan3g00042 381 Gene3D Aspartate-ornithine carbamoyltransferase 78 374 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 Hamap Aspartate carbamoyltransferase [pyrB]. 75 380 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Ecan3g00042 381 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 333 342 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 343 366 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 206 217 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 121 140 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 77 218 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 75 378 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 Gene3D Aspartate-ornithine carbamoyltransferase 206 365 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 337 342 - -
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 359 373 - -
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 151 160 - -
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 111 133 - -
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 205 222 - -
Ecan3g00042 381 PRINTS Aspartate carbamoyltransferase signature 297 306 - -
Ecan3g00042 381 FunFam Aspartate carbamoyltransferase 77 209 - -
Ecan3g00042 381 FunFam Aspartate carbamoyltransferase 2 210 365 - -
Ecan3g00042 381 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 72 378 - -
Ecan3g00042 381 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 225 376 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Ecan3g00042 381 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 121 128 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00042 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84448 Ecan3g00042 Ecan8g02496
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:310016 Ecan8g02496 Ecan-Chr8:36258454 wgd