AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00049 ATGGAAAAAGATGGTACTTGGATACCTTTAACACCAGGAAAGCCTATTTTCGCTACGTTTGGATATAGCAACGAGTCGACATTGACTTCTGAAAATGGAATTATAAAGGGAATTTTAAATGTGGCGTTTCCGTGTATAGATTTACTTGACAGTAACAGACTTATGGAAAAGGGAGGAATGAATGAGACCCATAAGTTGCCAGCTAGCATTCTTGATGAACATGAAGCATTTTTTGGTGCGGTTTTAACTGAATCTGAAAAGACGGCATTGGGTCAGGATGACACAAGCTGTGTACAAGAGGAGGCAGTAAAAGTTCCTTCAGGGTGTGATGGTAAAAAGGCGGCGGATGGTCTTGATGAGTCACTTGGCTCAGTTCCAACTCCATTTAGGACAGAAGACTCCAGGAAAAGGCGTAATAATGGTATTGACTTGAACAAGAAGCCAAGTCAAAGACCGCGGGTGAAAAAACACAGACCTAAAATATTCGATGAAAGCAAACCTAAAAGAGTCCCAAAGGTTCAAACTCCAAAGGGTACGACCCCACGACCAAAAAAAACACCAAAGCCTGCAACTCCAAATCGGGTACAAGAAAAGAGCGCGAGCTCGAAACATAATAAAGATACAGGATCGACGGATTGTGTGCAAAATTTTGCGAGTCATGGACATGTAGACGCTGAGCAAGTCGTCCAAGAAGCTGCTAGGGATTCATTAGTTGTTGCTAAACGATGCAACCGTTACTTGGATTTTGACTCTGATCTAGTTGCTCAAGAGTCTCATAATGTGTCAAAAATACAAGACTCCAGGAGAATTTTTTTTAACCTTGAAAGTTTCGGTTGTCTTGGTAAGATTGTTACTTCCAAGAGAAATACACCAAGGAGGAGTAAATTTCCAAAGAAGACTCATCAAGCTTCAGAGGATTTGTTTGGAGGTAATGACAAGGAGAAACATGAGCAAGCTTTTTGCTTTACAAGAGAAGAAGCAGCTGGAAAAAGTAGTAGTAAATATGTTTACTTTTATCAACGCCGAAAGAAAATTAATTCAAAAGTAATAAGTTACACCCCTACAGTGCAAGTATATCGTAGGACGTTTCGAGAAAATAACTGTGTTGAAAATAGTAAAAAGATCGGACCCAATTTTCCAAAACTATTCAAGCAACGAAGGACGTTTGGAAAAAAAGCAAATATAGGTTGGTGGTGCATAGACCGTGTTGAAGATGCGCAGGGTAATGGGAAAAGCTCACTTAGAAAGTGCATTCAAGCTACCAGTAAAAAGGTACATATTAAGGTCGATAAATCGAAAGATAAAAAACGACTGGTGAAAAAGCCTGAAATCCCGAGAGGAGAATGGCTTAGAAGTGTATTTTCACCTCCTAGAAGGAAGCGATCCATAAGGCAGATTCGTAGGATGGGAAATAACAAGGACTTTCTTGGTTCTAGCAGAATGCCTTATGATGATGATACATACCTTAAATGTCAAGAGGAATACTCTCTTCAGATTACAGACAGTCTCCCACAGCAAGATGTTGATATATGCCTTAACTGTGAGGAGAATTTTCTTCAGATCACAGAGAGCCTTCGACTGCAAGCTGATTATATAGATATCAACTGTGAAGAGGAAAATTTTCTTCAAATTACAGAAAGTGTCCCAGTACACGAGGTTCTGATCCATAGGATTGAAAGTTTTACCTCACTGCACCGTGATGTTCAACGAATTGATGATTTTGTATGCGGTCTAAACAATTTTCAGCTACAAGAGGTTCCCGTGTTTCAAAGTCTGGTACCCAGATATGAGGATGCCAAAGATAGACGTCCTCTATATGAACGAGAAATGACTCTAATTGTAACAGAGAAAATGGCAAGGCTAGACATCAATGGCCAATGCAACAAACTAGTGGTACGAGATCCAAATGCTGCTGGGAGACTAGCAAGTCTAGACTTCAATGATCAGTGCAAGGAACTAGTGGTACGAGATGAAAAGGTCAATGGGGCCATTGTGAAGGTATCTCCTACCAAGAAGCATAAAGTGCTTCCCAAGGTAGATCTTGACAAGGAGACTTTGAGAGTTTGGAAACTGTTGATGGAGAATGATGGAAGTGAACAACTTGAAGAAACTGATAAAGATAAGAATGAATGGTGGGACAAACAGAGAGAAATATTTCGTGGACGTGTGGACTCATTTATTGCCAAAATGCATCTTATTCAAGGTGACAGGCGTTTCTCACCATGGAAGGGTTCAGTAGTTGATTCGGTGGCTGGTGTTTATTTAACTCAAAATGTGTCCGACCATCTTTCAAGCTCTGCTTTTATGTCGGTGGCTGCAAGATTTCCGGTTAAGCCCAAAAGTAAGAAAGCTGATGATTACTTTGATGAAGTCGGAACTAGAAAAGAATCAGTCACATGTAATACAAAAGTTACTGAAGATCTCTGTAAGAATAATGGAATGGAACAAGATGTGATTACTTCATGTGCTGATGCATTTTCAACCACAGAACCTCAACAAGATGTGGATTCAAATCCAATTCTGGGTCAAGATGAGCCGTATGCCAATGAGAATTCTAATACTTTCCGAAAGCGTCTAGAAGTTGAGGAGTTCGACTTTCTCAAGCAGTTTTCTAGCCAGGAATCAATTGCAAGTAATAACGAAGGTGGTGAAAACTTCCTTAAGAACAACGACATAGAACAAAATGAGAGTACTAAATGTGACGAGTTTGGTAGCCAAGAATCATTCACCAGTACAACAAAAGATGGTGAAGATCTCTTTAAGGATAATGAAATGATACAGAATGTGAGTCCTGCATGTGCTGATGTCACTCCAACCACGAAACGTCAACAAGATACGACTTCTGACTCAATTTTGGCTCAAGATAAGCCTTGCATCAATGCAAATACTAATACTTCAGGCATGCTGCCAGGAGTTCAGGAGGTGGATTATCCCAAGGAGTTTTGTAGGTCTGGCATTAATGAATCATCAATAAATGAGAGCATGGTTAATTGGGATCTGAAAACAAGCATAGTAGAAGGTGAAGAGCAAACTGTAGTATCTTGTGATCTTCAGATTTCCTCCGAACCTTCTACAGCTATTTCTGATGTGAATGTGGGTTCATCTGAGACTTCAGAAAGAGATTTCATTGGTCAATTAGAGTCGATTTGTACAGAAGAACCAAAGGTTGTAACTCCAGTTTCTAGTCTCAAATGTGTACTCAACATTGCACAAGGGGTAAATGATGTAAACAATCATCAGGGCATGACCGAAATACTCGTAGAAACTGGAAGCACGGGAAAGAAGAAAAGTAAAATTGAGAAGAAGCAAGAATCCAAAATTGACTGGGAAGCATTGAGGAAAACTTATTGCAGATATGGCAGAAGAGAAACTGATGATAATTTCATGGATGCAGTTGATTGGGATGCAGTTAGACGCGCTCCTGTTGAAGAACTTGCTAAAGTCATAGCGGAGCGAGGAATGAATAATGTGCTAGCTGGACGAATAAAAGACTTTTTGGATAGAGTTTATCAAGACCATGGAGCTATCGATCTTGAATGGTTAAGGGACCTTCCACCCGACACAGCAAAGGAATTCTTGCTGAGCATTGATGGAATCGGTTTAAAGAGTGTGGAGTGTGTACGACTTCTAACGCTACATCATCTTGCTTTTCCTGTTGACACAAATGTTGGTCGAGTAGCCACACGTCTAGGGTGGGTCCCACTACAACCCCTTGGTGACGTTCCAATTCATCTTTTGAACGCTTACCCAATGGTGGACAAGATTCAGAAATACCTCTTCCCCAGGCTATGCACCCTTGACCAAAGAACATTGTATGAATTACATTATCAGTTGATCACATTTGGAAAGGTATTTTGCACCAAAGTAAAACCAAATTGCGATGCGTGTCCGATGAGAGCAGAGTGCAGGCATTATGCAAGTGCAGTTGCTAGTGGTAGGCTCAAACTTCCTGCACCGAAGGAAGGTAGTCATGTAACTTCAATCGTCCCTGTTGGAAATGAACAAAACTATTCAGTGTTTGGTATACCACCATCAATCATTGACCTGGAAGTCAACGAAACAAGTTCAAGTTATTATGGTCAAACTTGTGAACCCATAATTGAAGTTCCACAATCCCCCATGCCTGAAGTGGAAGACACATTAATATCTGTAGATGACATTGAAGATTTATTTTGTGAGTCGGATGATGAAATTCCCACAATCCGACTTAACACGGAAGAGTTCAGGGAAACTTTAAAAGATACTATAGATGCAAATAAAATTCCTCTCTCAGAGGGTGATATGTCGAAAGCTCTAGTTTCTTTGTCAGCAGAAGCTGCTACCTTTCGTATGCCACAAGTTAAGTATGTAGCCAGATTGAGGACTCTGCACGTTGTCTGTGAACTGCCAGACTTCCATCCGTGCTTGGCTGGGTTTGATGAGAGGGAACATGATGATCCTTCCCCATACTTGCTTAAGATTTGGCTTCCAGGTGAAATTCCCAATTCATTAGGATCTGCTGAAAACAGAGTATGTGATATCGCCAGCGATAATCATGAAGAAACAGTTAAAGCAACAGTCCTGATTCCTTGTAGAACTGCAAATAGAGGGACATTTCCCCTCAACGGCACATATTTTCAGGTCAACGAGGTGTTTGCCGATGATGAAACCACAAACTTTCCGATGGATGTTCCAAGAAGTCTGGTGCGGAATTTGCCAACACGAGAACTAGGTTGTGGGTCATCTGCAACATCAATATTCAGAGCCCTGCCAACCAGTGTCATTCAGCGCTTGTTCTGGAGAGGATCGATATGTGTAAGAGGATTCAATAGAAAAACAAGAAAACCTCATCCTCTTCACAGAAGATTTCATATATCAACAGCGGCGATTGCTGCAGAAAACAAAAAGTTAGAGAAGAAATAG 4902 40.74 MEKDGTWIPLTPGKPIFATFGYSNESTLTSENGIIKGILNVAFPCIDLLDSNRLMEKGGMNETHKLPASILDEHEAFFGAVLTESEKTALGQDDTSCVQEEAVKVPSGCDGKKAADGLDESLGSVPTPFRTEDSRKRRNNGIDLNKKPSQRPRVKKHRPKIFDESKPKRVPKVQTPKGTTPRPKKTPKPATPNRVQEKSASSKHNKDTGSTDCVQNFASHGHVDAEQVVQEAARDSLVVAKRCNRYLDFDSDLVAQESHNVSKIQDSRRIFFNLESFGCLGKIVTSKRNTPRRSKFPKKTHQASEDLFGGNDKEKHEQAFCFTREEAAGKSSSKYVYFYQRRKKINSKVISYTPTVQVYRRTFRENNCVENSKKIGPNFPKLFKQRRTFGKKANIGWWCIDRVEDAQGNGKSSLRKCIQATSKKVHIKVDKSKDKKRLVKKPEIPRGEWLRSVFSPPRRKRSIRQIRRMGNNKDFLGSSRMPYDDDTYLKCQEEYSLQITDSLPQQDVDICLNCEENFLQITESLRLQADYIDINCEEENFLQITESVPVHEVLIHRIESFTSLHRDVQRIDDFVCGLNNFQLQEVPVFQSLVPRYEDAKDRRPLYEREMTLIVTEKMARLDINGQCNKLVVRDPNAAGRLASLDFNDQCKELVVRDEKVNGAIVKVSPTKKHKVLPKVDLDKETLRVWKLLMENDGSEQLEETDKDKNEWWDKQREIFRGRVDSFIAKMHLIQGDRRFSPWKGSVVDSVAGVYLTQNVSDHLSSSAFMSVAARFPVKPKSKKADDYFDEVGTRKESVTCNTKVTEDLCKNNGMEQDVITSCADAFSTTEPQQDVDSNPILGQDEPYANENSNTFRKRLEVEEFDFLKQFSSQESIASNNEGGENFLKNNDIEQNESTKCDEFGSQESFTSTTKDGEDLFKDNEMIQNVSPACADVTPTTKRQQDTTSDSILAQDKPCINANTNTSGMLPGVQEVDYPKEFCRSGINESSINESMVNWDLKTSIVEGEEQTVVSCDLQISSEPSTAISDVNVGSSETSERDFIGQLESICTEEPKVVTPVSSLKCVLNIAQGVNDVNNHQGMTEILVETGSTGKKKSKIEKKQESKIDWEALRKTYCRYGRRETDDNFMDAVDWDAVRRAPVEELAKVIAERGMNNVLAGRIKDFLDRVYQDHGAIDLEWLRDLPPDTAKEFLLSIDGIGLKSVECVRLLTLHHLAFPVDTNVGRVATRLGWVPLQPLGDVPIHLLNAYPMVDKIQKYLFPRLCTLDQRTLYELHYQLITFGKVFCTKVKPNCDACPMRAECRHYASAVASGRLKLPAPKEGSHVTSIVPVGNEQNYSVFGIPPSIIDLEVNETSSSYYGQTCEPIIEVPQSPMPEVEDTLISVDDIEDLFCESDDEIPTIRLNTEEFRETLKDTIDANKIPLSEGDMSKALVSLSAEAATFRMPQVKYVARLRTLHVVCELPDFHPCLAGFDEREHDDPSPYLLKIWLPGEIPNSLGSAENRVCDIASDNHEETVKATVLIPCRTANRGTFPLNGTYFQVNEVFADDETTNFPMDVPRSLVRNLPTRELGCGSSATSIFRALPTSVIQRLFWRGSICVRGFNRKTRKPHPLHRRFHISTAAIAAENKKLEKK 1633
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00049 1633 MobiDBLite consensus disorder prediction 115 212 - -
Ecan3g00049 1633 SMART ccc3 1285 1305 IPR003651 GO:0051539(InterPro)
Ecan3g00049 1633 MobiDBLite consensus disorder prediction 829 849 - -
Ecan3g00049 1633 Gene3D - 1215 1302 IPR023170 -
Ecan3g00049 1633 Pfam RRM in Demeter 1519 1618 IPR028925 -
Ecan3g00049 1633 Gene3D Hypothetical protein; domain 2 1128 1214 - -
Ecan3g00049 1633 SMART endo3end 1111 1284 IPR003265 GO:0006284(InterPro)
Ecan3g00049 1633 MobiDBLite consensus disorder prediction 157 171 - -
Ecan3g00049 1633 CDD ENDO3c 1133 1237 IPR003265 GO:0006284(InterPro)
Ecan3g00049 1633 MobiDBLite consensus disorder prediction 130 144 - -
Ecan3g00049 1633 SUPERFAMILY DNA-glycosylase 721 1307 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Ecan3g00049 1633 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 116 1629 IPR044811 GO:0019104(InterPro)|GO:0035514(InterPro)|GO:0141166(InterPro)
Ecan3g00049 1633 MobiDBLite consensus disorder prediction 290 309 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00049 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:390933 Ecan6g02927 Ecan-Chr6:38557224 dispersed