AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00075 ATGAAAACAATACGAGTACTTCAAAGTGTGTGTAATCAGATGGAAGAATCGCAAGAGATATTATTGAACTCACTGGCAAACGTCGGAGTACCGATTTCGCCGGAGATTGTTTCCGTTTCCGATCTAACGCCGGAATCCTTTATTTCAGTCTGCGCTCACTCTCTGCGCATAATTTCCAAATCGGAATCGATTCCGATCAGTTTACCGGAATCAATGGCCGATCGTTTCAAGTTCTGTACCGATTTAGCCTCGTCGTTCGAAAACCTAGGTTTCATCGGCGACATTAGCTTCCATAAGTTCCTGTATCCATCTGAAGAAGACATGTATAAGTTGATCAGATTTTTGGTTGGGAGGCTCTCTGAATCGTCCCATACAGTAAACATAGAGAATTTTGAAAAATCTACTGCCGATGAAGGACGGGATTTAAGTATGAAAGTTGAGCGTCTAAATGTGAAAGCTGAAGAAGATGTGTCGAGTTCAATCCGAAATGGGGAAGCTGGTGATGTTGGATTAACTGGTGTGGAAAACGGGGGAGGTTTAATAGAGGGCGCTCAGTATTCAAAAAATTCTATCGGTGAAAAGGGCGGGATGATATCTCAGAAAGGCGGTGAATATAAACTTGAGCAGGCACCAATGTCTTTTAAGGAGAATCCATCTCAGATGAGTGACACGTCAGATTCTTCAGTAAATCAAGTATATGTGCTTTCGAATGATGTGACTGCAAAATCATTAGAGTTACAGCAACTTGAAGAGCAACATGATTTGTTGAAAGCTGCAGTGGAAATGGCTTGCAATGAACGAAACCCTTTGGATTCATATATTAAACAGCTCAATGAGAAAATAGATGTAAAGAGGGATAACCTTGCAGAACTGGAGTCAAAATGGAAAGCCATCATGATACCTTTAGAACAGAGGAAAAGAAATCTTGAAACAGCTATTTTTGCAAAACAACCAGAGTGGAAAAAACTTGAGAACGACTTGGAGTCTGTATTGTCTGAAACAAAGAAGAGGGAGAAGGAACTTTCCAATCTATCAACAGAAATTGAGAAACTACCCAAATTGGCAACACGGAGATCTTACATTGAGCGAATAAAAGAGATCACTAAGAACAGTCGGAAGCAGGATATTGACATAGAACGTATTTTAAATGACACTCGGGAGCTTCAATTGGAGAGTAACATGATTCAAGAACGCCTACATCGAACTTATGCTGTGGTAGATGAAACACTACTGAGGGCGGCAAAGAAGGATCAAGTAGGGGAGCAAGCTCACATCATTCTGACAACCATCCACGAGAGTTTTGAAGAAATTTCAGAAAAGATTCTTGTGACTGATAGAGCTCAGAGAGAAGCAGCGGATCTTGAAGACAAGCTTACTCATATTGTTTCCGGAAGTTTGAACATGGACACACTACAAGCAGATCTTGATGCCATTAGAAAGGAAAACGAAATTCTTCAATCTCGTTTGGGTAATCCTTAA 1479 40.64 MKTIRVLQSVCNQMEESQEILLNSLANVGVPISPEIVSVSDLTPESFISVCAHSLRIISKSESIPISLPESMADRFKFCTDLASSFENLGFIGDISFHKFLYPSEEDMYKLIRFLVGRLSESSHTVNIENFEKSTADEGRDLSMKVERLNVKAEEDVSSSIRNGEAGDVGLTGVENGGGLIEGAQYSKNSIGEKGGMISQKGGEYKLEQAPMSFKENPSQMSDTSDSSVNQVYVLSNDVTAKSLELQQLEEQHDLLKAAVEMACNERNPLDSYIKQLNEKIDVKRDNLAELESKWKAIMIPLEQRKRNLETAIFAKQPEWKKLENDLESVLSETKKREKELSNLSTEIEKLPKLATRRSYIERIKEITKNSRKQDIDIERILNDTRELQLESNMIQERLHRTYAVVDETLLRAAKKDQVGEQAHIILTTIHESFEEISEKILVTDRAQREAADLEDKLTHIVSGSLNMDTLQADLDAIRKENEILQSRLGNP 492
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00075 492 Coils Coil 468 488 - -
Ecan3g00075 492 Coils Coil 274 294 - -
Ecan3g00075 492 Pfam CCDC22 protein coiled-coil region 213 460 IPR048348 -
Ecan3g00075 492 Pfam CCDC22 protein N-terminal domain 14 120 IPR048349 -
Ecan3g00075 492 PANTHER JM1 PROTEIN 207 490 IPR008530 GO:0097602(PANTHER)|GO:2000060(PANTHER)
Ecan3g00075 492 Coils Coil 239 266 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00075 K23343 coiled-coil domain-containing protein 22
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:543678 Ecan3g00075 Ecan-Chr3:543678 tandem