AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00078 ATGGAACTCATTCCATACTCTGATCCAAACACCGCCACCTCACCACCGTGGCAAGACATGTTCCGGTCAGCTTCCACCCTCAAACCACCATCTCCACCACCACAATCCACCACTAAAAACACCCCAGATGATCAAAAAGATTCATCATCTTTTTCAGGTGACCAACATGTACGTTTAGCATTATATATAGCCATGGCTCATGCTGGCTTAGCTTTTGCTATGTTTATACTTTATGGTGTTTGTAAATTACTTGAAGAATATTTAAGGCCTATTTTATGGGCCGTTCTTTGTTCAATTCCACTTAGAGGTATTCAACAGACCCTTGTTCTGTTTTGGACTAAGCCTTTAGAATTAGGCCTTGTTGATACTATCTTAGCTATCCCTGTATCTATATATGATGTTTTTATTGGTACATTAGTTGATGTTAAAGATTTGTTGTATAGACTTGTTTGGGTTAAGAAGGATAGAAAACCGGATCGAAAGAGTACCGGGTTTTCGATATTGTTAAGATGGTTGGTGTCTTTTTGGGTTTTTGTTATGGCTTATGAACATTTTGGTGTTTTTGGTGGGGTTAGTTTGTTGGGGTTGGGGTTTATGTTTACTTCTAGTAAGGTGAAATCTAGTTTGTCGGTTATATCTTCGTTTCGTGGTGAACAAAATCTTTATACGGGTTTTTTAACAAAAGGGGTTTTGAAAAGGTTGCAGACCATTGTGGCGATCGGGTTGATTTTTGGCATGATTTTTGGTTCTTTGAGTGTGACTATGTTTTTTTCGTATAAGATTGGAGTTGAAGGGAAAGATGTGGTGTATTCGATAAAAACCCATGTTGAAGAAAATAATTATGCCGAGAAAATTGGGTTAAGAAAATGGATGGATGATAACAATGTGCCTGGAATGGTGGATAAGTACGCGACTCAGTTTTATGAAACTGTGAATGAACAGATTGATAGTTTGGCTATGCAGTATAATGTGACGGAAATTGTTCAGGAAATGAAACAAGTGATTGCACCAACGTTAAACGCAACAAACTCTTCTACACCTACTACCGTATTAGTAACTTCTAGCCCGTATGCTGAAAAGATACGAAGTTTGAGAAAAATGTTTACTAATCGTGAATGGTCAGCTATCTATCCAGAAGTTAACGCTTTGTTAAAAGAGGCCCGGGTTAGCAAAGCGGATATGATTGAAAAAGCTAAAGCAATTGCTTTTCAAGGAAAAGATGTGCTTCAACGAGTGCTTGCAAGTAGTATATCAATCGTTGGTGGCAGTACTAAGCTTGTTTTCATAGTTATTGAGTCAATTGTATCTGGAGCAGCGGGTCTTTTTAATTTTGTTTCGCAGTCAATGGTTTTCATATGGGTTTTGTACTCTTTGATAACGTCGGATTCTGGAGGAGTTACAGAACAAGTTATGTATATGATTCCAATTTCAAGATCTGCTAGGACACGGTGTGTTGAGGTTCTTGATAAAGCCATTTCTGGAGTTCTTTTGGCTACAGTAGAGATTGCCTTTTTTCAAGGATGTCTTACTTGGCTTTTGTTTAGACTTTTTGATATTCATTTCTTGTATATGTCAACGCTGCTTGCATTTATTAACCCTTTGCTCCCGATATTTCCCTATTTTTTCTCAACAATTCCAGCAGCAATGCAGCTGGTACTGGAAGGTAGATATGTTTATGCTGTATGCTTGTCGATTATTCATCTTGTGCTTATAGACTATGGTACCACCGAGATTTTAGAGGACGTGCCTGGTTATAGTGCATATCTCACTGGGCTCAGTATCATCGGTGGAGTGGCATTGTTCCCATCTGCATTGGAGGGAGCGATAATGGGGCCATTGATAACGACTGTTGTCATTGCTCTTAAGGATTTGTATGTAGAATATGTTTTGGATGAACCAAAAGAAGATACAACGGAGTAA 1920 38.49 MELIPYSDPNTATSPPWQDMFRSASTLKPPSPPPQSTTKNTPDDQKDSSSFSGDQHVRLALYIAMAHAGLAFAMFILYGVCKLLEEYLRPILWAVLCSIPLRGIQQTLVLFWTKPLELGLVDTILAIPVSIYDVFIGTLVDVKDLLYRLVWVKKDRKPDRKSTGFSILLRWLVSFWVFVMAYEHFGVFGGVSLLGLGFMFTSSKVKSSLSVISSFRGEQNLYTGFLTKGVLKRLQTIVAIGLIFGMIFGSLSVTMFFSYKIGVEGKDVVYSIKTHVEENNYAEKIGLRKWMDDNNVPGMVDKYATQFYETVNEQIDSLAMQYNVTEIVQEMKQVIAPTLNATNSSTPTTVLVTSSPYAEKIRSLRKMFTNREWSAIYPEVNALLKEARVSKADMIEKAKAIAFQGKDVLQRVLASSISIVGGSTKLVFIVIESIVSGAAGLFNFVSQSMVFIWVLYSLITSDSGGVTEQVMYMIPISRSARTRCVEVLDKAISGVLLATVEIAFFQGCLTWLLFRLFDIHFLYMSTLLAFINPLLPIFPYFFSTIPAAMQLVLEGRYVYAVCLSIIHLVLIDYGTTEILEDVPGYSAYLTGLSIIGGVALFPSALEGAIMGPLITTVVIALKDLYVEYVLDEPKEDTTE 639
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00078 639 PANTHER TRANSMEMBRANE PROTEIN 20 637 IPR002549 -
Ecan3g00078 639 MobiDBLite consensus disorder prediction 1 51 - -
Ecan3g00078 639 MobiDBLite consensus disorder prediction 7 25 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00078 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84454 Ecan3g00078 Ecan5g01961
84455 Ecan3g00078 Ecan8g00040
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:556677 Ecan5g01961 Ecan-Chr5:33005945 wgd
Ecan Ecan-Chr3:556677 Ecan8g00040 Ecan-Chr8:408407 wgd