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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00082 ATGGCATCTTTTAATAGACTTTTCATTGGTAGTAGTCGTCTTTCATCAGTTGGGCCTAGAACATCATCATCTCTTTTGAATTGCTATTCTTCTCTCCCTAGAACAACATTAATTACGACCATCGATATGAAGTCCAAATTCCAGCAAGTTTATGATACTCTGAAATATGAGCTACTTCATGATCCGTCATTTGTATTTGATGACGATTCTCGTCAATGGGTTGACAAGATGATCGACTACAATGTGCCAGGAGGAAAGATGGTTCGAGCCGTTTCTGTTGTCGATAGCTACTGGTTGCTTAAAGAAGAAGAAGAACTCACAGATAATGAAGTTTTTCTTGCTTGTGCTCTTGGTTGGTCCATTGAATGGCTTCAAGCATATCTTATTGTCCATGATGACATAATGGATGGCTCCTATACCCGCAGAGGTCAACCCTGTTGGTTCAGACTATCCGAGATTGGCATGAGTGCTGTAAATGATGGTGTTATTCTTCGGAACCATGTCTTCAAGATCCTTAAGAGATATTTCCATAATAAAGTCTATTATGTGCATCTGCTGGACCTCTTCAATGAGGTGGAATTTCAAACAGTCTCTGGACAAATGATTGATGCGATTGCTGCACATGTTGGAGAGAAAGATCTCTCAAACTACACCTTATCTTTTTACCGTCGCATGGTTGCATACAAAAGCTCTTATTACTCATTTTACCTTCCGGTTGCATGTGCATTCCTTATGTTTGGAGAAAGTTTGGATGATCATATTCAAATGAAAGATATCCTTGTTGAAATGGGTATCTATTATCAAGTTCAGAATGATTATCTTGACACTTTCGGTGACCCTAATGTGTTTGGCAAGACCGGAACAGATACTGAAGAACGTAAGTGTTCGTGGTTGGTTGTGAAAGCACTGGAACTAGCCAACGAGGAGCAAAAGAAAATTCTCAACGGTGCCTATGAAGAGTACGAGAACAAGACTAATGAGGAGCTAGTCAAATCAATTGAAGCTTACCCAAACAAAGTAGTACAGGAAATACTGAAATCATGCTTGACAAAGATATATAGGAAGCATAAGTAA 1074 39.2 MASFNRLFIGSSRLSSVGPRTSSSLLNCYSSLPRTTLITTIDMKSKFQQVYDTLKYELLHDPSFVFDDDSRQWVDKMIDYNVPGGKMVRAVSVVDSYWLLKEEEELTDNEVFLACALGWSIEWLQAYLIVHDDIMDGSYTRRGQPCWFRLSEIGMSAVNDGVILRNHVFKILKRYFHNKVYYVHLLDLFNEVEFQTVSGQMIDAIAAHVGEKDLSNYTLSFYRRMVAYKSSYYSFYLPVACAFLMFGESLDDHIQMKDILVEMGIYYQVQNDYLDTFGDPNVFGKTGTDTEERKCSWLVVKALELANEEQKKILNGAYEEYENKTNEELVKSIEAYPNKVVQEILKSCLTKIYRKHK 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00082 357 SFLD Polyprenyl Transferase Like 43 354 - -
Ecan3g00082 357 SFLD Isoprenoid Synthase Type I 43 354 - -
Ecan3g00082 357 Pfam Polyprenyl synthetase 72 332 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Ecan3g00082 357 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 43 318 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
Ecan3g00082 357 ProSitePatterns Polyprenyl synthases signature 1. 129 143 IPR033749 -
Ecan3g00082 357 CDD Trans-IPPS-HT 69 354 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Ecan3g00082 357 SUPERFAMILY Terpenoid synthases 60 355 IPR008949 -
Ecan3g00082 357 Coils Coil 300 327 - -
Ecan3g00082 357 Gene3D Farnesyl Diphosphate Synthase 37 356 IPR008949 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00082 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:584541 Ecan7g00906 Ecan-Chr7:9563599 dispersed
Ecan Ecan-Chr3:584541 Ecan3g00082 Ecan-Chr3:584541 tandem
Ecan Ecan-Chr3:584541 Ecan3g00083 Ecan-Chr3:611452 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g00038 ACH 39 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 77.457 0.0 563.0
Ecan3g00081 . 45 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 61.765 1.49e-160 454.0
Ecan3g00082 . 45 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 57.941 2.23e-146 417.0
Ecan3g00083 ACH 41 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 72.965 0.0 535.0
Ecan7g00906 . 39 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 72.254 0.0 525.0
Ecan7g00902 . 39 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 71.387 0.0 517.0
Ecan7g00901 . 32 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 70.538 0.0 522.0