AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00093 ATGGCGTCGTCGGATACAGAGACGTTTGCATTCCAAGCGGAGATCAATCAGCTTTTGAGTCTGATTATCAACACTTTTTACAGCAACAAAGAGATCTTCCTTCGTGAGCTTGTTAGCAACGCTTCCGATGCTTTGGATAAAATTCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTAGATGCTCAACCTGAGCTCTTTATCCACATCATTCCTGATAAAACCAACAACACGTTGACCATCATCGACAGTGGAATTGGAATGACAAAAGCAGATCTGGTGAATAATTTGGGAACCATTGCTCGATCTGGTACCAAAGAATTCATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGACAATTTGGTGTTGGGTTCTACTCGGCTTATTTGGTTGCTGAGAAAGTCATTGTTACCACAAAACACAATGATGATGAGCAGTATGTTTGGGAGTCACAAGCTGGTGGCTCATTCACCATCACTCGTGATGAAAGTGAGCCTCTTGGCAGGGGTACAAAAATTACCCTTTACCTCAAGGAGGACCAGCTTGAGTATCTAGAGGAACGCAGACTCAAGGATCTGATCAAGAAGCATTCCGAGTTCATTAGTTACCCAATCTCTCTTTGGGTTGAGAAGACAACTGAGAAGGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAAGATGAGGAAGGCAAAGTCGAGGAGGTTGATGAAGAAAAGGAGAAGGATGAAAAGAAAAAGAAGACTATCAAGGAAGTGTCACATGAGTGGGATTTAATGAACAAACAAAAACCCATCTGGATGAGGAAACCAGAGGAGATCTCCAAGGAAGAATATGCTGCTTTCTACAAGAGCCTCACAAACGATTGGGAGGAGCACTTGAATGTAAAGCACTTCTCAGTTGAAGGGCAGCTGGAGTTCAAGGCTGTTCTTTTTGTTCCCAAAAGAGCCCCTTTTGACCTCTTTGACTCAAAGAAGAAGCCCAACAACATCAAGCTTTATGTTCGCCGTGTCTTCATTATGGACAACTGTGAGGATATTATTCCAGAATATCTTGGATTCGTCAAGGGTATTGTTGATTCTGAAGATCTTCCTCTTAACATCTCAAGAGAAATGTTGCAACAGAACAAGATCCTCAAGGTTATCCGCAAGAATTTGGTGAAGAAGTGCATTGAACTCTTCCAAGAGATTGCAGAAAACAAGGAAGACTATGCAAAGTTCTATGAAGCATTCTCAAAGAATCTCAAGCTTGGTATCAATGAAGATTCTACAAACAGGACTAAACTGGCTGAGTTACTTCGATACCACTCCACCAAGAGTGGTGATGAACAAACCAGCTTGAAAGACTATGTTACAAGAATGAAAGATGGCCAGAACGACATTTACTATATTACTGGTGAGAGCAAGAAGGCTGTAGAGAACTCCCCATTCCTTGAGAAGTTGAAGAAGAAGGGATATGAGGTCTTGTACATGGTTGATGCCATTGATGAGTATGCTGTGGGCCAGCTGAAGGAGTTTGAAGGAAAGAAGCTTGTTTCTGCCACTAAGGAAGGTCTAAAGCTTGAGGAAACCGAAGATGAGAAGAAAAAGCAAGATTCTTTGAAGGAGAAGTTTGAGGGTTTGTGTAAGGTGATTAAGGATGTATTGGGTGACAAGGTTGAGAAGGTGGTTGTTTCTGACCGTGTGGTTGACTCACCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACCGCCAACATGGAAAGAATCATGAAGGCACAAGCATTGAGGGATGCCAGCATGGCTGGATACATGTCCAGTAAGAAGACCATGGAGATCAACCCTGAGAACTCTATTATGGAGGAGCTGAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTCAAGGACTTGGTGCTGTTGCTGTTCGAGACTGCTTTGTTGACTTCTGGATTCAGCCTTGATGAACCAAACACCTTCGGTAACAGGATTCACAGGATGTTGAAACTTGGTCTGAGCATCGATGAAGATGCAGGTGAGGATGCTGACATCCCTGCTCTTGAAGAGGCTGATGTTGATGCTGATGGCAGCAAGATGGAGGAAGTCGACTAA 2100 43.43 MASSDTETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTITRDESEPLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEGKVEEVDEEKEKDEKKKKTIKEVSHEWDLMNKQKPIWMRKPEEISKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYAKFYEAFSKNLKLGINEDSTNRTKLAELLRYHSTKSGDEQTSLKDYVTRMKDGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLEETEDEKKKQDSLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENSIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAGEDADIPALEEADVDADGSKMEEVD 699
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00093 699 FunFam Heat shock cognate protein 4 229 - -
Ecan3g00093 699 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 7 214 IPR036890 -
Ecan3g00093 699 Coils Coil 221 255 - -
Ecan3g00093 699 FunFam Heat shock protein 90 alpha 263 431 - -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 171 188 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 189 207 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 28 50 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 120 142 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 7 27 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 77 94 IPR020575 -
Ecan3g00093 699 PRINTS 90kDa heat shock protein signature 95 112 IPR020575 -
Ecan3g00093 699 FunFam Heat shock protein 90 alpha 519 669 - -
Ecan3g00093 699 Hamap Chaperone protein HtpG [htpG]. 4 665 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ecan3g00093 699 SMART HKATPase-4 29 183 IPR003594 -
Ecan3g00093 699 MobiDBLite consensus disorder prediction 216 249 - -
Ecan3g00093 699 ProSitePatterns Heat shock hsp90 proteins family signature. 27 36 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Ecan3g00093 699 Gene3D - 263 431 - -
Ecan3g00093 699 PIRSF HSP90-HTPG 1 699 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ecan3g00093 699 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 182 IPR003594 -
Ecan3g00093 699 Gene3D - 432 518 - -
Ecan3g00093 699 CDD HATPase-Hsp90-like 16 203 IPR020575 -
Ecan3g00093 699 Gene3D - 519 669 IPR037196 -
Ecan3g00093 699 Pfam Hsp90 protein 185 685 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ecan3g00093 699 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 4 674 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ecan3g00093 699 Gene3D - 1 228 IPR036890 -
Ecan3g00093 699 SUPERFAMILY HSP90 C-terminal domain 543 664 IPR037196 -
Ecan3g00093 699 FunFam Heat shock protein 90 alpha 432 518 - -
Ecan3g00093 699 SUPERFAMILY Ribosomal protein S5 domain 2-like 264 519 IPR020568 -
Ecan3g00093 699 MobiDBLite consensus disorder prediction 218 239 - -
Ecan3g00093 699 Coils Coil 523 543 - -
Ecan3g00093 699 MobiDBLite consensus disorder prediction 677 699 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00093 K04079 molecular chaperone HtpG
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Event-related genes

Select Gene_1 Gene_2 Event_name
84460 Ecan3g00093 Ecan5g01966
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:655981 Ecan5g01966 Ecan-Chr5:33042456 dispersed
Ecan Ecan-Chr1:35828079 Ecan3g00093 Ecan-Chr3:655981 transposed
Ecan Ecan-Chr4:29342800 Ecan3g00093 Ecan-Chr3:655981 transposed
Ecan Ecan-Chr5:29582318 Ecan3g00093 Ecan-Chr3:655981 transposed
Ecan Ecan-Chr3:655981 Ecan5g01965 Ecan-Chr5:33024756 wgd