AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00104 ATGGTGGAAACTGTACGGACATACCAACATCAATGGCCCATAACAGAAACAAAAGAAGTAAAATGGTTGAAGCATTATTCATCTGATCATCAGATTTTGTTGGTGGGAGAAGGAGATTTTTCATTTTCACTTAGTTTGGGTTTGGCTTTTGGTGATGCTTCCAACATTGTGGCTACTTCTTTGGACTCTTTTGATCTTGTGATGAAGAAATACAAGGGAGCAAAAAGAAACTTGGATATCTTGTATTCTCTTGGAGCTCAGTTGTTACACGGAGTTGATGCCTTCAGAATGAAGCTTCATACAGATCTTCAAATGCGGAAGTTTGACCGGATCATTTATAACTTTCCACATGCCGGTTTCCATGGGAATGAAGACAACCAACGCATGATTATGATGCACAGAAATCTGGTTTGCGGTTTCTTTAAAAACGCAAGTGGCATGCTGCGTCCAGAGGGTGAAGTTCATGTAGCCCACAAGACTTCACATCCTTACCAATCTTGGAACATCGAAGAACTTGCTACTCAAAATTCCTTAAGATTGCTTGAATGCATAAAGTTCAGACTTGAAGATTATCCAGGTTACAACAACAAAAGAGGCGATGGAAAAAGATCTGACCAGCCATTTCATCTAGGAGAGTGTAGTACTTACAAGTTCGTATTGTCATTAAAAGCCAAAAAACCAACCACCTCATGTCAAAGAAGCCCTCATCAACCTCAAGAAATTTCATCACAAACACTGCAAATTAGTATGGCTAAGAATCCTGCTCCTGTTTTCAACAGCTCTGAATGCTTCCAGGTTTTCAAGGAGTATTTTGATCATGCACTATCAACATTTGGGCATGTTGATGAGCATATTTTCCGTTCTGTTCCGCATCTGCTGGAAATCGGGTTTGAAAGATGCAAGGCCAATATCCATGTTGATCCCTTAAATGCTTACACATATCTTTTGACAGAGCTTCAACATATGAGTAAACAGAGGTTATTATTTCTGCAAAACCATTTACTTGAGGCCGATCACCAGTATCAGTATGGCTTCTAA 1038 39.6 MVETVRTYQHQWPITETKEVKWLKHYSSDHQILLVGEGDFSFSLSLGLAFGDASNIVATSLDSFDLVMKKYKGAKRNLDILYSLGAQLLHGVDAFRMKLHTDLQMRKFDRIIYNFPHAGFHGNEDNQRMIMMHRNLVCGFFKNASGMLRPEGEVHVAHKTSHPYQSWNIEELATQNSLRLLECIKFRLEDYPGYNNKRGDGKRSDQPFHLGECSTYKFVLSLKAKKPTTSCQRSPHQPQEISSQTLQISMAKNPAPVFNSSECFQVFKEYFDHALSTFGHVDEHIFRSVPHLLEIGFERCKANIHVDPLNAYTYLLTELQHMSKQRLLFLQNHLLEADHQYQYGF 345
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00104 345 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 33 198 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Ecan3g00104 345 Gene3D Vaccinia Virus protein VP39 34 187 IPR029063 -
Ecan3g00104 345 FunFam Os09g0479300 protein 30 181 - -
Ecan3g00104 345 PANTHER PHENYLALANYL-TRNA SYNTHETASE 19 208 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Ecan3g00104 345 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 184 IPR029063 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00104 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:745635 Ecan3g00104 Ecan-Chr3:774565 dispersed
Ecan Ecan-Chr3:757820 Ecan3g00104 Ecan-Chr3:774565 tandem