AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00122 ATGATGAAAAAGAAGATAACGATCTCATTTCTGCTCGTATTTTGCTGCTGTTTAATCTCTTTTTCTACTTCATCTCCACTTTCCATTTCAGATGGTGTTTTCAGCAGCTCTGATTCTTCTTCATTTGGACGGGCTCTTCTTCAAGCTAAAAAACCGTGCCCCGTGAACTTTGAGTTCATGAATTACACAATCATAACCAGCCAATGCAAAGGACCACGATACCCTGCTGATATATGTTGTCAAGCTTTTAAAGACTTTGCTTGCCCTTACGCTGATGACTTGAACGATTTGTCAAATGAGTGTTCGACTACCATGTTCAGTTACATCAATCTCTACGGTTCTTATCCACCTGGGCTTTTTTCTAGCTTGTGTCGGGATGACAAAGTCGGGCTCATCTGCCCTGCTTCAGCACCAGGATCAGGAAGAAACGGTGTCGGGGCTGATACTAATAACAGCCATAACATCCGCAGCCCGTCAATGCTGTTAACATTAACTATGGGATTTATAGCATTCTTGTTCCGGTGGTTTTAA 531 42.37 MMKKKITISFLLVFCCCLISFSTSSPLSISDGVFSSSDSSSFGRALLQAKKPCPVNFEFMNYTIITSQCKGPRYPADICCQAFKDFACPYADDLNDLSNECSTTMFSYINLYGSYPPGLFSSLCRDDKVGLICPASAPGSGRNGVGADTNNSHNIRSPSMLLTLTMGFIAFLFRWF 176
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00122 176 PANTHER GPI-ANCHORED PROTEIN LLG1-RELATED-RELATED 4 173 IPR039307 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00122 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
84466 Ecan3g00122 Ecan5g01982
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr1:9004551 Ecan3g00122 Ecan-Chr3:972551 transposed
Ecan Ecan-Chr6:10500368 Ecan3g00122 Ecan-Chr3:972551 transposed
Ecan Ecan-Chr1:15751115 Ecan3g00122 Ecan-Chr3:972551 transposed
Ecan Ecan-Chr3:972551 Ecan5g01982 Ecan-Chr5:33174151 wgd