AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00137 ATGGCCCATAGAAAGAAAACCACCGCCACCGCCACCGCCACCACCTCCGACGCCGCATACGGCGGCGACAACTTACTAGAAAGAATCCCAGAAAGCATTCTTAATGAAATCTTTATCAAGTTACACCCACCTGATTCTCTAACCACACTCACCACTTTATCTTGTGTTTCAAAAACACTTCAATCTTCTGTCAACAAAACTCTGTCTTCTTTCACATCCCTCGATCTCTCTACCATTTCATTGGATAGTGAAACATTTGATGGGATTGTTAAAAGGTTTGGAAAGATTAAGAATATAACCTTGGATTGTCTTAGGATAAACGATGATTCAGTTAGAAGGTTTCTTGGTTCAGATGTTGAAGAATTGGTTTTGTTGAAATGTTCTTCACTCTCTTACTCACTCCTTGCTAGCATTGGAAGTTCTTGTTGCAATCTAAGGGTGCTTACTTTAGAGTTTTCTGGAGTTATTGACAAGTCTGCAGCATTTGCTTTGAATTTCGAAGGCTCACTTCGGAGTTGCCTATGTTTAGAGTCTCTAAGAATTAAAATCCGTGGAGGAGAAATCGATGATTATGGCTTTATGTTGCTTGGAATCTACCTTTTGATGCCTGGAACACTCAAGGTTCTTAAGCTTGAGCCAGCTAGTGCATTGGATACTATAGTTTTCTTTAGGACCTTTACATACACGACTACCGAGTTTCCTGTTGGTCTTACGACTTTTGGAAAGGCATTGACACATATATCTTTAGTTTTGGATATCATTTGTGACACTCTTGTCCGCACTATTGTACACGGCCTTCCTCTACTGTCAGAGTTGGATCTTAAAGACCGGCCAACATCTGAACCGTCTGACGACCTATCTGACTTCGGGCTTCAATCACTAGCTGGCTGTACGCATCTAACTAGCCTGTCTCTTATACGAAGCCGACAAAATATTGCTACCTCGTTCAAAAGGGTGACTGATATGGGTATGTTTTTACTTTCGGAGGGTTGCAAAGGACTAGAATCAGTTCGATTTGGTGGGTTTTCTAAAGTTAGTGATGCGGGGTTTGCATCAGTTTTCAATTCATGTTTGAAATTAAAAAAGTTTGAGATTCAAAATGCTTCCCTTTTGACCGACTTGACGTTCCAAGACGTAAGTAAGGTTCCTAGGTCCCTTGTGGAGGTGAAGTTGGTGTCATGCAGTTTTATAACCAGTGAATCAGTGAGTGAATTGGCAACATGTAGCTCATTGGAAGTTCTTGATTTGCTTGGCTGCCGAAGTGTAGCAGATCCTTGTCTTCACAATGTATCATTACTTACTTCGTTGACGACTTTAAACTTAGGTGGTGCTGATGTTACTGATGTTGGTATGGCTATTCTAGGTAAAGGGAATGCACCCATCACTTGTCTATCTCTCAGAGGTTGCAAGAGGGTAACAGATAGAGGAATCATGTTTCTGTTTGAAAGCGGAGGAAAGTTTCACAAGACTTTGTCATTTCTTGATCTTGGTCATATGCCCGGGATCACAGATTCGGCCATATCATCCATTGCCACTGTATGTGTAGGGCTTACAGAACTATGCATTAGGAATTGTTTTCATGTTACAGATACTTCCATAAAGGCTTTGGCTTTAAAGGATACACATGAAGGCGATAGTAAACCTCTACGGAAGCTTGATCTTTATAATTGCACTGCTTTGTCTGCTGGATCTTTTGAATTTCTGAAAAAGCCAAATTTTCGTGGTTTACAATGGATTGGAATTGGACGGACCCGATGGTTTTGTGAAGATACCAAGTTAGCTGAAATAGACAGGGAAAGACGATGGCTGTTTATTTGTGCCGACGGTTGTGAGCTGGGGTGTCATGATGGATGGCAATTTCACAAGTTTTGA 1872 41.19 MAHRKKTTATATATTSDAAYGGDNLLERIPESILNEIFIKLHPPDSLTTLTTLSCVSKTLQSSVNKTLSSFTSLDLSTISLDSETFDGIVKRFGKIKNITLDCLRINDDSVRRFLGSDVEELVLLKCSSLSYSLLASIGSSCCNLRVLTLEFSGVIDKSAAFALNFEGSLRSCLCLESLRIKIRGGEIDDYGFMLLGIYLLMPGTLKVLKLEPASALDTIVFFRTFTYTTTEFPVGLTTFGKALTHISLVLDIICDTLVRTIVHGLPLLSELDLKDRPTSEPSDDLSDFGLQSLAGCTHLTSLSLIRSRQNIATSFKRVTDMGMFLLSEGCKGLESVRFGGFSKVSDAGFASVFNSCLKLKKFEIQNASLLTDLTFQDVSKVPRSLVEVKLVSCSFITSESVSELATCSSLEVLDLLGCRSVADPCLHNVSLLTSLTTLNLGGADVTDVGMAILGKGNAPITCLSLRGCKRVTDRGIMFLFESGGKFHKTLSFLDLGHMPGITDSAISSIATVCVGLTELCIRNCFHVTDTSIKALALKDTHEGDSKPLRKLDLYNCTALSAGSFEFLKKPNFRGLQWIGIGRTRWFCEDTKLAEIDRERRWLFICADGCELGCHDGWQFHKF 623
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00137 623 Gene3D Ribonuclease Inhibitor 486 596 IPR032675 -
Ecan3g00137 623 Gene3D Ribonuclease Inhibitor 84 484 IPR032675 -
Ecan3g00137 623 SMART LRR-CC-2 331 356 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 458 483 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 433 457 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 383 408 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 514 539 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 116 141 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 546 582 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 357 382 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 488 513 IPR006553 -
Ecan3g00137 623 SMART LRR-CC-2 266 297 IPR006553 -
Ecan3g00137 623 ProSiteProfiles F-box domain profile. 23 74 IPR001810 GO:0005515(InterPro)
Ecan3g00137 623 PANTHER UNCHARACTERIZED 388 569 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Ecan3g00137 623 SUPERFAMILY RNI-like 34 307 - -
Ecan3g00137 623 SUPERFAMILY RNI-like 319 589 - -
Ecan3g00137 623 Pfam Leucine Rich repeat 434 451 IPR001611 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00137 - -