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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00143 ATGCTTAAGTGGGTATTATTCTATGACCATTTGGTTCTTTGCTCTTGTGCCTACTGCAGAGTTATTATTCTAACACTAGGATGGATAATATTCCTCTCATGCTACATTCCTGTGCATATGCTACTAAAAGGCCATGATAAATTGAGGAAAAGGTTAGAGAGAGCTCTGGTTGAGTTGATTTGCAGTTTCTTTGTGGCATCATGGACAGGGGTTGTCAAGTATCATGGTCCACGACCATGTGCAAGGCCAAAACAGGTATTTGTGGCCAATCATACATCAATGATTGATTTCATTGTTTTAGAACAGATGACTGCATTTGCAGTCATTATGCAGAAACACCCTGGCTGGGTTGGACTTCTGCAAAGCACTATTTTGGAAAGTGTGGGATGTATATGGTTCAATCGTTCTGAAACAAAGGATCGTGAAATAGTAGCTAGAAAGTTAAGGGAACATGTTGAAGGATCCGACAACAATCCTCTTCTTATATTCCCTGAAGGAACTTGTGTAAATAATAACTACACTGTTATGTTTAAAAAGGTCCAAAGATTACTGATCCATCAGTGTTAA 567 38.8 MLKWVLFYDHLVLCSCAYCRVIILTLGWIIFLSCYIPVHMLLKGHDKLRKRLERALVELICSFFVASWTGVVKYHGPRPCARPKQVFVANHTSMIDFIVLEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSETKDREIVARKLREHVEGSDNNPLLIFPEGTCVNNNYTVMFKKVQRLLIHQC 188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00143 188 CDD LPLAT-LPCAT1-like 60 179 IPR045252 GO:0008374(InterPro)
Ecan3g00143 188 Pfam Acyltransferase 72 179 IPR002123 GO:0016746(InterPro)
Ecan3g00143 188 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 12 178 - -
Ecan3g00143 188 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 14 179 - GO:0004366(PANTHER)|GO:0005783(PANTHER)|GO:0019432(PANTHER)
Ecan3g00143 188 SMART plsc-2 85 186 IPR002123 GO:0016746(InterPro)
Ecan3g00143 188 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00143 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:1250321 Ecan3g00143 Ecan-Chr3:1273384 proximal
Ecan Ecan-Chr3:1273384 Ecan3g00144 Ecan-Chr3:1273384 tandem