AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00171 ATGGAAACTGCAAAAAAAGAATTCTTGAAAGAATTTGGTGAATCTTACGGCTATCCAAATGCCCCAAAGAATATTGATGATATCAGAGCTACTGAATTCAAAAGACTTGATGGGAATGTGTATTTGGATCATGCTGGTGCAACTTTGTATTCTGAAAAGCAAATGGAAGCAGTTTTTAAAGATCTTACTACTAATGTATATGGAAATCCTCATAGTCAAAGCAGCGCTAGCTTGGCCTCCTCAGACATTGTAGAAGATGCTCGTCATCAGGTTCTCAAACTCTGCAATGCATCCCCAAAAGAGTACAAATGTATATTTACTGCTGGGGCAACAGCAGCTCTTAAACTTGTTGGCGAGGCTTTTCCATGGAGTAGTCAGAGCACTTTCATGTATACAATTGAGAATCACAACAGTGTTCTAGGAATCCGAGAATATGCTCTCAATAGAGGAGCCGTGGCTTTGGCAATAGATTTTGTGGATGCTGCAGAATCAGACACGTGTACAAGCAGTAGATCTTCCATCAAGGTCTTGCAGCATCCTCTTCAAAAGAGAAATGGTGCTAGGACATGGGACGAAGAGCCTAATGGCCAAGTATACAATTTATTTGCTTTCCCTTCTGAGTGTAATTTCTCAGGAGTGAAGTTTAACCTTGATTTGATAGACGTTATTAAAGAAGATTCAGAAAAAGTATTGGAAGGCTCTCAACATTGCAGGGGAAAATGGATGATTTTAATTGATGCTGCAAAAGGATGTTCCACCGACCCTCCAAATCTATCAAAGCATAGAGCAGACTTTGTTGCTATCTCTTTTTACAAGCTTTTTGGCTATCCAACTGGACTTGGAGCTTTGATCGTACGTAATGATGCTGCAAAGTTATTAAGGAAGACCTACTTTAGTGGAGGCACAGTGGCTGCATCAATTGCTGACATTGATTTTGTGAAAAGAAGAGAGGGTATTGAGGAGTCTTTCGAAGACGGAACACTATCATTCTTGAATATAGCATCCATTCGGCATGGGTTAGATATTCTCAATACTCTGACCACATTTTCCATATCACGGCATACATCGTCACTGGCTAGATATACAAGAAATATGCTTTTGGCATTAAGGCATGCTGATGGGGAGGAGGTTTGCAAAATATATGGCATGGATTATTTGAAGGTGTCGTGTAGTGGACTTGGTCCTGTAGTTTCTTTCAACTTGAAAAGGCCTGATGGTTCCTGGGTTGGTCATCGTGAAGTGGAAAAGTTGGCTTCTTTGTCTGGAATTCAACTACGGACAGGATGCTTCTGCAATCCTGGTGCATGTTCTAAGTATCTTGGTTTATCTCATCTGGATCTTCTATCCAACATTGAGGCTGGGCATGTTTGCTGGGATGACTATGATATATTACAAGGAAAACCCACTGGAGCTGTTAGGGTATCTTTTGGGTATATGTCAACATTCGAAGATGCATGGAAATTTGTGAACTTCATCGTAAGCTCCTTTCTATTGTTGCCCAACAATACTAGACATCTTTATCAACTCATATCCAACTCTATCCAGCCTGATGCAGAAGATGCAGGTCATGGGAAGACAACAAAACATTATCTTGAGTCAATTGTTGTGTACCCAATAAAGTCATGTGCAGGATTCAGAGTAGACAGTTGGCCTTTAAGCAGCACTGGATTGTTATATGATCGAGAGTGGCTTCTCAAAAGCATGAATGGTGAAATTCTTACGCAAAAGAAGGTACCTGAGATGTATTTTATCGGTACAAAGATTGACCTCAAAACAGGAATACTTCATGTGGAGTCTCCTCGGTGCAAAGAGAAACTGCTTATAAAACTTAAGTCGAATTTAGCTGAAGTGGTAGAAGAAATCAGCGTACATGCTCAGAGATATGAAGTTTTGGGCTATAATAACGAGATCGACACGTGGTTCAGCAATGCAATTGGCCGACCTTGTTATTTGCTGAGATCAAGTTCCAGAGGTTGTATCCGCTTGAACAGGAACAAAGTCACGGGCATATGCAGAGACGTAGATACCAGACTAAACTTCGTTAATGAAGCTCAACTTTTATTGGTATCCAAGGAAAGTGTATCTGACCTTAACCACAGATTGAGATCAACAGTAACAGAGAGAGGATCTGCTGGATTACTGATAGAAGTCGATGCAATGAGATTCCGACCCAATCTTGTCATATCTGGTGGTGTGCCATATGCTGAAGACAGCTGGAGTGGTCTTAAGATTGGAGGCAATCACTTCATGTCATTGGGTGGTTGCAACCGATGCCAGATGATCAATTTGAATTATCAAGATGGTGAAGTACAGAAATCAAATGAACCTCTGGCTACTTTAGCGGCATACAGGAGAGCCAAGGGGAAGATACTCTTTGGAATTTTATTGAGATACGAGTTAGACAACGAGGCTAGGGAAGATATATCATCATGGATTCAAGTGGGACAAGAAGTATACCCTAAAGCAGAATGA 2472 40.86 METAKKEFLKEFGESYGYPNAPKNIDDIRATEFKRLDGNVYLDHAGATLYSEKQMEAVFKDLTTNVYGNPHSQSSASLASSDIVEDARHQVLKLCNASPKEYKCIFTAGATAALKLVGEAFPWSSQSTFMYTIENHNSVLGIREYALNRGAVALAIDFVDAAESDTCTSSRSSIKVLQHPLQKRNGARTWDEEPNGQVYNLFAFPSECNFSGVKFNLDLIDVIKEDSEKVLEGSQHCRGKWMILIDAAKGCSTDPPNLSKHRADFVAISFYKLFGYPTGLGALIVRNDAAKLLRKTYFSGGTVAASIADIDFVKRREGIEESFEDGTLSFLNIASIRHGLDILNTLTTFSISRHTSSLARYTRNMLLALRHADGEEVCKIYGMDYLKVSCSGLGPVVSFNLKRPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACSKYLGLSHLDLLSNIEAGHVCWDDYDILQGKPTGAVRVSFGYMSTFEDAWKFVNFIVSSFLLLPNNTRHLYQLISNSIQPDAEDAGHGKTTKHYLESIVVYPIKSCAGFRVDSWPLSSTGLLYDREWLLKSMNGEILTQKKVPEMYFIGTKIDLKTGILHVESPRCKEKLLIKLKSNLAEVVEEISVHAQRYEVLGYNNEIDTWFSNAIGRPCYLLRSSSRGCIRLNRNKVTGICRDVDTRLNFVNEAQLLLVSKESVSDLNHRLRSTVTERGSAGLLIEVDAMRFRPNLVISGGVPYAEDSWSGLKIGGNHFMSLGGCNRCQMINLNYQDGEVQKSNEPLATLAAYRRAKGKILFGILLRYELDNEAREDISSWIQVGQEVYPKAE 823
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00171 823 SUPERFAMILY PK beta-barrel domain-like 675 785 IPR011037 -
Ecan3g00171 823 ProSiteProfiles MOSC domain profile. 652 821 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Ecan3g00171 823 Pfam MOSC domain 675 819 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Ecan3g00171 823 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 496 - -
Ecan3g00171 823 Hamap Molybdenum cofactor sulfurase [MOCOS]. 15 820 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Ecan3g00171 823 Gene3D - 54 345 IPR015421 -
Ecan3g00171 823 SUPERFAMILY PLP-dependent transferases 30 493 IPR015424 -
Ecan3g00171 823 Pfam Aminotransferase class-V 240 485 IPR000192 -
Ecan3g00171 823 Pfam Aminotransferase class-V 40 151 IPR000192 -
Ecan3g00171 823 SUPERFAMILY MOSC N-terminal domain-like 531 660 - -
Ecan3g00171 823 Pfam MOSC N-terminal beta barrel domain 530 648 IPR005303 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00171 K15631 molybdenum cofactor sulfurtransferase [EC:2.8.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:1663245 Ecan3g00173 Ecan-Chr3:1665372 dispersed
Ecan Ecan-Chr3:1663245 Ecan3g00171 Ecan-Chr3:1663245 tandem
Ecan Ecan-Chr3:1663245 Ecan3g00172 Ecan-Chr3:1663245 tandem