AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00206 ATGTCGAACGGTGTAAAGACCAAGGTTGGAATCAATGGTTTTGGAAGAATTGGAAGGTTGGTGTTGAGAATAGCATCATTTAGAGATGATATTGAGGTTGTTGCTGTCAATGATCCTTTTATTAATTCTGATTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGTGTATTTAAAGGAACCATCAATGTTGTTGATGAGTCCACTTTGGAAATCAATGGAAAGCATATAAAAGTGACTAGCCAAAGAGACCCTGCAACAATTCCTTGGGGTGATTTTGGAGCTGACTATGTTGTTGAATCATCTGGGGTTTTTACAACACTTGATACAGCTTCAGCACATAAGAAGGGTGGCGCCAAAAAGGTGGTGATTTCCGCTCCGTCAGCTGATGCACCTATGTTTGTTGTAGGAGTAAATGAGACCACATACAAGCCACACATGGATATTGTATCTAACGCAAGCTGCACCACTAACTGCTTGGCACCTTTGGCCAAGGTGGTTCATGAGGAGTTTGGTATTGTCGAAGGTTTGATGACGACTGTTCATGCAACAACAGCTACACAAAAAACTGTTGATGGACCTTCAATGAAGGATTGGCGTGGAGGTCGTGGTGCGGCCCAAAACATCATCCCTAGTTCAACTGGCGCCGCCAAGGCTGTAGGGAAGGTGTTACCAGAACTAAACGGAAAACTCACGGGTATGGCCTTTAGGGTCCCAACAGCAAATGTTTCTGTTGTGGATCTAACTTGTCGACTTGAGAAAAGTGCTTCATATGAAGATGTTAAAGCTTCTATAAAATATGCTTCTGAGGGTCCCATGAAAGGAATTCTCGGGTACACTGATGAGGATGTTGTCTCCAATGATTTTGTTGGTGATTCCAGGTCAAGTATTTTTGATGCGAAAGCCGGAATTGGGCTAAGTGCATCATTTGTGAAGCTGGTGTCATGGTACGACAACGAGTGGGGTTACAGCAACCGGGTGTTGGACCTCATAGAGCATATGGCGTTGGTGGCAGCTGCCAACTAA 1029 43.73 MSNGVKTKVGINGFGRIGRLVLRIASFRDDIEVVAVNDPFINSDYMAYMLKYDSTHGVFKGTINVVDESTLEINGKHIKVTSQRDPATIPWGDFGADYVVESSGVFTTLDTASAHKKGGAKKVVISAPSADAPMFVVGVNETTYKPHMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKSASYEDVKASIKYASEGPMKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAAAN 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00206 342 Gene3D Dihydrodipicolinate Reductase; domain 2 156 322 - -
Ecan3g00206 342 SMART gp-dh-n-7 7 156 IPR020828 GO:0051287(InterPro)
Ecan3g00206 342 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 4 336 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 150 168 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 177 193 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 IPR020831 GO:0016620(InterPro)
Ecan3g00206 342 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 166 - -
Ecan3g00206 342 FunFam Glyceraldehyde-3-phosphate dehydrogenase 155 320 - -
Ecan3g00206 342 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155 318 - -
Ecan3g00206 342 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 8 108 IPR020828 GO:0051287(InterPro)
Ecan3g00206 342 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 8 330 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Ecan3g00206 342 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 154 161 IPR020830 GO:0016620(InterPro)
Ecan3g00206 342 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 161 318 IPR020829 GO:0016620(InterPro)
Ecan3g00206 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 172 IPR036291 -
Ecan3g00206 342 Gene3D - 8 335 - -
Ecan3g00206 342 PIRSF GAPDH 5 340 IPR020831 GO:0016620(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00206 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:2303934 Ecan8g03531 Ecan-Chr8:44093601 dispersed
Ecan Ecan-Chr3:2303934 Ecan3g00207 Ecan-Chr3:2311647 tandem