AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00210 ATGGAAACAATGAGCAAATCAGGTTTTTTACCTGGAGCTCTAACTGAGGATGAGATGGAGAACCTTGCTCGGAATGAGAGAATGGCTATATATGTGTCGAATGTAGCTAATTTGGTGCTTTTCCTTGCTAAACTCTACGCCTCCTTCGAGAGTAGATCATTGGCAGTTATTGCATCAACTTTGGATTCATTTTTGGACTTGTTATCTGGATTCATTTTATGGTTTACTTCAGCTGCTATGAGAAATCCTAACCAATATCACTATCCGATTGGGAAGAATCGTATGCAACCTGTTGGTATCATCGTTTTCGCATCAGTAATGGCAACTCTTGGTTTCCAAATATTGTTAGAGTCTGCCAGGGAACTCATTGCACATACTCACCCTAGCAAGGATCATGACGATGAAATGTGGGTGATCGCTATCATGGTGTTTGTTACAGTCGTGAAGTTCATACTCATGGTTTATTGCCGAAGATTTGAAAATGAAATAGTGAGAGCCTACGCTCAAGATCATTTCTTCGATGTCATCACAAATTCCATTGGGTTAGCCGCTACTGTGTTGGCCATACGATACAAATGGTGGATCGATCCTATTGGAGCAATAATTATTGCGTTCTATACCATCAATACATGGACAAAGACCGTAATAGAGAACGTATGGATGTTAATAGGAAGAACGGCTCCTCCCGAGTTTTTGGCAAAATTGACATATTTGGTTTGGAACCATCACAAAGAAATACAACACATTGATACAGTACGATCATACACATTTGGGAGTCATTACTTTGTGGAGGTAGATATAGTGTTGCCTGCGGATATGGTACTAAGTGAGGCACACGATATCGGTGAAATGTTACAAGAAAAGCTAGAGCGATTGCCAGAAGTAGAACGAGCTTTTGTTCATATTGACTTTGAGTATACTCATGTACCTGAACATAAAGGAAAGGCTTGA 951 40.06 METMSKSGFLPGALTEDEMENLARNERMAIYVSNVANLVLFLAKLYASFESRSLAVIASTLDSFLDLLSGFILWFTSAAMRNPNQYHYPIGKNRMQPVGIIVFASVMATLGFQILLESARELIAHTHPSKDHDDEMWVIAIMVFVTVVKFILMVYCRRFENEIVRAYAQDHFFDVITNSIGLAATVLAIRYKWWIDPIGAIIIAFYTINTWTKTVIENVWMLIGRTAPPEFLAKLTYLVWNHHKEIQHIDTVRSYTFGSHYFVEVDIVLPADMVLSEAHDIGEMLQEKLERLPEVERAFVHIDFEYTHVPEHKGKA 316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00210 316 Gene3D Cation efflux protein, cytoplasmic domain 226 304 IPR036837 -
Ecan3g00210 316 Pfam Dimerisation domain of Zinc Transporter 228 303 IPR027470 -
Ecan3g00210 316 NCBIfam cation diffusion facilitator family transporter 29 303 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ecan3g00210 316 FunFam Metal tolerance protein 11 225 305 - -
Ecan3g00210 316 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 18 313 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Ecan3g00210 316 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 227 303 IPR036837 -
Ecan3g00210 316 Gene3D Cation efflux protein transmembrane domain 27 222 IPR027469 -
Ecan3g00210 316 SUPERFAMILY Cation efflux protein transmembrane domain-like 25 224 IPR027469 -
Ecan3g00210 316 FunFam Metal tolerance protein 11 29 222 - -
Ecan3g00210 316 Pfam Cation efflux family 31 222 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00210 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84480 Ecan3g00210 Ecan5g02029
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:2334277 Ecan5g02029 Ecan-Chr5:33669678 dispersed
Ecan Ecan-Chr3:2325302 Ecan3g00210 Ecan-Chr3:2334277 tandem