AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00235 ATGAACATCGAAATCATAGGGCGGCATGCGCTTCTCTTCGACGACGATGCAAACGCAGCGTTCGTAAACTCCGACGACGCACTTGTAGAATGGAATTCGCTTCTAATTGACCGTTACGACGTCCGTCACCTCCTTTCCACTCCTCCGCCGTCCCGCCGCCGCCGTAATCCACAAACGTCTCATTCTTCCGCTGCCGATGCTGAAATTGATTATGAACGGTATCTGGATCTCCATTCATCTTCTGATGACGAACAAGAATATGCGAAAACAGAAGCTGTGGGTGGCTTTAATGCTGTTCCTTTTTCATATGGAAACTATGAGGATTCTAATGATCAACAGAAGGCTGAGACTGAATCGGAAATCTCTGGATTTCATCCCCCTTTCCCTGTTCCTCGCAGCTTGGTTCAAAATTTGCCTCCTACAAAGAAGGTACACCAGATCATTGCAAGGACTGCTCTTTTTGTTAGCAAGAATGGAGGTCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGATAACCCGACGTTTGGCTTCTTAATGCCTGACCATCACCTACATCCGTACTTTAGGTTTCTGGTTGATCACCAAGATCTTTTGCAGTCGAAATATGAGGGGCAGGATAATGATAAAACATCCAATACTGAGAATGCTGCAGGAGCTGGAGCCTTGTCTTTGCTTGGTTCTGTTTATGGTACTGGTGAGGATGAGGATGCGGGAGTCGAGCATGCATCATCCCCTGGAGAATGTGTATCTGGTAACACTGTGGATATAAATGCCACCATGTCTCTTGCAACAGGGAAAACCAATGCTGCTGGAAAAGATGAGTCTTCAAAGCATTCACTTCTTTCAAACAAAGACGCTCCTATCTTGAAAAGAAGTTCTATATCAACTGCATCAAAGACTGGAAGGACAAGCAGTATGAATAAAGGAGAGTCTTTGGGTTCACTTCCTGCTGCTCCAGATAAGTTGCGGGCTTCTTCGCTTCCGCCTATTCCGAAGACTGAGCAAATGCTCCTGGATCCTCCATCTGATATGAAACCATTGGTTGACAAGATTGTAGAGTTCGTCATCAAGAATGGCAGGCAGTTTGAGGCAGTACTTATAGAACAAGACCGTGGCCATGGGAGATTTCCATTCCTACTCTCATCTAATATATTCCATCCTTACTATTTAAAAGTTCTGCAGAAAGCCCAGGAGTCAAAATTAACGATTAAGAGTTTCCACAATGAGAAAGAGGAATCCAGAGGAAATATCTGGAACAAGAAAACGTCCGTCTCAAGGGAGAAAAGGAATCATCTGGTGGAATCTGATGATATACCAGTTGATCCTGAAAGGAAAGAAAAGTTCAAGATGGTAATTAACAAGTCTAAAAAGGATGGATCAGATTTGCCAGCTAAAGCCACACAACCGGAACCTAGAGTTCAGGTAGATGCTGCTCAAGCAGCAGCTATTCTTCAAGCTGCTACGAGAGGAGTCAACCATCCTAGTTTAGGAATTCTGTTTGGGCAACCCTCGAATGGAGCTAAATCCTCTGAAGCACAAATGACTCATGAGCAGAAGTTAAAGGCAGAGAGACTAAAACGGGCTAAAATGTTTGTGGCACAGCTGAAAAGTGGAGCCGCTCCTTTAAAAGCTGAAGCTCCACGTGGCTTTTCGGTCGAACCGCCAGGAACAGCGGTTGACAGTGGCCTTGCATCCAAAGATGGAGTGAGGAGCACAATTCCTTTAAAAGACGCTTCTGAGAGAAAATTGAAGTCTGAAAAGGAACATTTGAATGTGGAAAGACGATCAAAGAGGAAATACCGAGCTAGAGGCGAAGCATCAGAAGTAGCAGAAGTTGAAGAAGAAGAAGAAGATGATAATTCTGAGGTTGATGAGAGAGATGGAAAAAAAACACGTAGACGCCATACAAAGAAGCACCGATCTCGTAATCATTCAGTTGAAGCTGACAGTGAAGATGATGAAAGAGAGTATAAGCATGTTAAAAGAACACATCGATCTCATCGCTCTTCACATAAGCATGATGACATGGACAAAAGCAAGGAAGAAAGGGATCATAAGTCATCAAGGAAAAAGAAGCATCGATCTCCTAGCTCTTATGAAGATGATGATGGACACAAAAGTGACCGTGAGTATTCCAGAAAGAAGCACCGGTCACGTTATTCTTCATTTGATGAGTCCTCTGATGAAATTGATAGTGACCACAAGTATTCTAGAAAAAAGCGTAAACATAGATCTCACAGATCTTCTCATCACAGTAAAGATAGGCACAAGGATAGCAAACGCCACTCGTCTAGGCATAGACAGGAACGTGACGTCTTATCTGAAGAGGAGTCGAGGGACCATATCAAGGCTGATAAGCATAAAAAGGGATCAAACTCAGAAAAAGAAGAACTTGAAGAGGGGGAGATCAGCTCAAAGTTATCGGGGCAATCAAGAGAGAGACCTTTTGCTAAAGTTTCTAGTCGCGAACCTTCGGTTGATATATCAAGTCAAGATAGGAGACCATCTAGCCAGCCCATTGATACAACTGAGGTCCCTGAGGACCTCAGGGCCAAAATCAGAGCAATGTTAATGTCCACAATGTAA 2589 43.76 MNIEIIGRHALLFDDDANAAFVNSDDALVEWNSLLIDRYDVRHLLSTPPPSRRRRNPQTSHSSAADAEIDYERYLDLHSSSDDEQEYAKTEAVGGFNAVPFSYGNYEDSNDQQKAETESEISGFHPPFPVPRSLVQNLPPTKKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQDLLQSKYEGQDNDKTSNTENAAGAGALSLLGSVYGTGEDEDAGVEHASSPGECVSGNTVDINATMSLATGKTNAAGKDESSKHSLLSNKDAPILKRSSISTASKTGRTSSMNKGESLGSLPAAPDKLRASSLPPIPKTEQMLLDPPSDMKPLVDKIVEFVIKNGRQFEAVLIEQDRGHGRFPFLLSSNIFHPYYLKVLQKAQESKLTIKSFHNEKEESRGNIWNKKTSVSREKRNHLVESDDIPVDPERKEKFKMVINKSKKDGSDLPAKATQPEPRVQVDAAQAAAILQAATRGVNHPSLGILFGQPSNGAKSSEAQMTHEQKLKAERLKRAKMFVAQLKSGAAPLKAEAPRGFSVEPPGTAVDSGLASKDGVRSTIPLKDASERKLKSEKEHLNVERRSKRKYRARGEASEVAEVEEEEEDDNSEVDERDGKKTRRRHTKKHRSRNHSVEADSEDDEREYKHVKRTHRSHRSSHKHDDMDKSKEERDHKSSRKKKHRSPSSYEDDDGHKSDREYSRKKHRSRYSSFDESSDEIDSDHKYSRKKRKHRSHRSSHHSKDRHKDSKRHSSRHRQERDVLSEEESRDHIKADKHKKGSNSEKEELEEGEISSKLSGQSRERPFAKVSSREPSVDISSQDRRPSSQPIDTTEVPEDLRAKIRAMLMSTM 862
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00235 862 Gene3D Surp module 333 402 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 MobiDBLite consensus disorder prediction 671 685 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 51 65 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 292 342 - -
Ecan3g00235 862 Pfam Surp module 348 395 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 Coils Coil 576 596 - -
Ecan3g00235 862 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 722 IPR040397 GO:0000395(PANTHER)
Ecan3g00235 862 MobiDBLite consensus disorder prediction 540 850 - -
Ecan3g00235 862 SUPERFAMILY Surp module (SWAP domain) 124 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 ProSiteProfiles SURP motif repeat profile. 348 390 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 MobiDBLite consensus disorder prediction 765 808 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 824 844 - -
Ecan3g00235 862 Pfam Alternative splicing regulator 3 118 IPR019147 -
Ecan3g00235 862 SMART DRY-EERY-2 1 107 IPR019147 -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 738 764 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 643 661 - -
Ecan3g00235 862 SUPERFAMILY Surp module (SWAP domain) 324 395 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 MobiDBLite consensus disorder prediction 45 66 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 574 609 - -
Ecan3g00235 862 MobiDBLite consensus disorder prediction 695 737 - -
Ecan3g00235 862 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 MobiDBLite consensus disorder prediction 292 312 - -
Ecan3g00235 862 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 SMART surpneu2 346 399 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Ecan3g00235 862 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00235 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr1:45709950 Ecan3g00235 Ecan-Chr3:2646140 dispersed