AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00242 ATGCAAATAAATGAGAAGATGATCAATGAAAAGGAAAGCAATTCATCACCAACAACTCCGGATGATGTACATAGCGAAATCATACCCACAGCAACCTTGCTAAAACAATTAGCCATAGGTGTTCAGACTACAAGAATTATAAATTCTATGAAGGATCTTATGAGATCATCAGGAGATGTTTCACCGGTGAAAGAAAGAACTAGTTTAAGTTTATCTGCAATGAAGTCATTTGTAGTCGGCGAGAAGGAAGACAAGTTTGCTTCTGAGTTTGGTCGTGATGAAAAAGTAATGTCATTCATCCATTCGTTACAGGATCCAGAAGGACATCTTTCAGAAAGGAAGACGCGGTCTCCATTCGATAAGAGTACAAACATTACTAATTTTACCAAAGAACTTCACGGTGCTCCTCCTGATAGCTTTGTTACAGATCTTGCTGAAGCCATTGGAAGTTTGAAAACTCTGAGAAAAATGGCAATATTTTGGTCTAGAGTTGTTGTGGAATTGAGAAGGCTATGGTGTGAAGGGCAACACATTCCTGGCATCCCTCCAGATGAAATTCCAAATTTAAATTCGTGTTTGTTATATCAGCAGTTGCAAGTTATCAATTGCTGTATTTCTAGGAAAAAATGTCGTGCTATAGCCACAGAATCAGTAGAATCTGTTTTAAGACAAGCCACTAATAATGTGGACAAATCGCCTCCTTCTGGAGATATTGTGTATGCTAAAATTAGCTCAGGAGAACTCGTGCTTCGTTTGGGAATTTATAAACAACTTGAAAATACTATGCTTTTGGATACCGGAGAACCTGTTTATACCCCAGTTTTGCAGGAAGGGCCTCTACTAACAGAAGATGTTATCAAGGAAAATGAGGAATTTGTGTTACGTACTGGAAGCGTAGGTGCAGGGTGCTCTCAGCTTCTATCCGATATGCAGGCTTTCAAGGCTGCAAATCCAGGGTGCATATTGGAAGACTTTGTTAGATGGCACTCACCACCGGATTGGACGGAAACATTAACAGACGATCAAAGTAAAGCATTTGTGGTTGGTGATAACACATCTCCAAGAGGACACCTAAGTACTCGTATGCAGAAAGAAGGTAATTTGTGGCGACAACTATGGGAAAATGCAAAACCAATACCTGCTGTTAGACAGGCTCCACTATACTATGAGGATTTATCTGTGGAAGGCATTCTGCTTGGCTTCGAGACTATATCACCTTCTGGTTTCTTTGAGCAGCTGTTTCTTTCTCTTGTAAGTATATCTGTTGAAATGAATATCTGA 1281 39.73 MQINEKMINEKESNSSPTTPDDVHSEIIPTATLLKQLAIGVQTTRIINSMKDLMRSSGDVSPVKERTSLSLSAMKSFVVGEKEDKFASEFGRDEKVMSFIHSLQDPEGHLSERKTRSPFDKSTNITNFTKELHGAPPDSFVTDLAEAIGSLKTLRKMAIFWSRVVVELRRLWCEGQHIPGIPPDEIPNLNSCLLYQQLQVINCCISRKKCRAIATESVESVLRQATNNVDKSPPSGDIVYAKISSGELVLRLGIYKQLENTMLLDTGEPVYTPVLQEGPLLTEDVIKENEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTETLTDDQSKAFVVGDNTSPRGHLSTRMQKEGNLWRQLWENAKPIPAVRQAPLYYEDLSVEGILLGFETISPSGFFEQLFLSLVSISVEMNI 426
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00242 426 MobiDBLite consensus disorder prediction 1 23 - -
Ecan3g00242 426 Pfam Rab3 GTPase-activating protein catalytic subunit 251 398 IPR026147 -
Ecan3g00242 426 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 24 423 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(InterPro)|GO:0043547(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00242 K18270 Rab3 GTPase-activating protein catalytic subunit
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:2698248 Ecan8g02480 Ecan-Chr8:36156811 dispersed
Ecan Ecan-Chr3:2698248 Ecan8g02479 Ecan-Chr8:36156735 wgd