AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00256 ATGAAGGCTCAATTCACTAGCAAATTAAACCTATTATCATCATCATCACCGTTCAATCGCCGTTCATTTCCTTTCTTATTTTCACTTCCAATTATTAATCATTATTATTATTACAATTCAAAACCTAGGGTTTGTAATTTATTAAATATATCGACGGTTGCGACGGTTATAGATAGCAGTATGGGGTCTCAATCGGCGGCGGAAGTTGAGTGGCCGGCGAATAAAGTTAGAAAAACGTTTATAGAGTTTTTTGAACAGCGGAATCATGTGTATTGGAAATCTAGTCCTGTTGTTCCTGTTAATGATCCTACGCTTTTATTCGCTAATGCCGGTATGAATCAGTATAAGCCGATTTTTTTGGGTACTGCTGACCCAAACACTCAATTGAGCAAGCTCACCCGTGCCTGCAATACACAGAAGTGTATTCGGGCAGGTGGGAAACATAACGATCTTGATGATGTTGGTAAAGACACTTATCATCACACCTTCTTTGAGATGTTGGGTAATTGGTCGTTTGGTGATTATTTTAAAGAGGAAGCCATTGGATGGGCATGGGAGCTTCTCACAATGGTTTATAAGCTACCCGCTGATCGAATATATGCTACTTATTTTGGTGGTGACGAGAAATTGGGCCTTCCTGCTGATAGCGAAGCTAAAAATATATGGCTAAAGTATCTGCCTCCTGCACGAGTTTTGCCATTTGGTTGTAAAGATAACTTTTGGGAAATGGGTGATACTGGACCTTGTGGACCCTGTACTGAAATACATTTCGATAGAATTGGTGGTCGTGAGGCCGCAGAGTTGGTAAACAATGACGACCCTACTTTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCCGATGGCTCCTTAAAACCGTTGCCTGCTCAACATGTGGATACTGGCATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTGTTTATACCTATTTTTGATTCTATCCAGCAGGCAACTGGTGCTAGGCCATATTCAGGCAAAGTCGGGCCAGATGATTCAGACGGAATTGATATGGCTTATAGAGTTGTTGCTGACCATATAAGAACTCTTTCATTTGCTATTGCAGACGGTTCTCGTCCAGGTAATGAAGGGCGTGAGTATGTTTTGCGACGAATTCTTAGGCGAGCCGTACGCTATGGAACAGAAGTATTGAAAGCCCAGCAAGGATTCTTCAACGGATTAGTGAAAGTTGTAGTGGATGTAATGGGCCATGTTTTCCCTGAGCTAAAAGCACAAGAGGAACATATTAGAGAGGTCATAGCAGACGAGGAAGCAAGTTTTGGAAGGACATTACTTCATGGAATTGAGAAGTTTAAGAGGACTGTTCAAGATGTTAAGGGAAAGTCATTCAGTGGACAGGATGCATTTGTGCTGTGGGATACCTATGGATTTCCATTGGATTTGACGCAGCTGATGGCAGAAGAAAGAGGGCTTGTGGTTGATGTTGAGGGTTTTAATACTGCTATGGATGAAGCAAGAGAAAAATCCAGGAATGCCCAGAATAAGGGTAATGCTGGTGCGATTGTCATGGATGCAGAAGCTACTTCAATACTGCATAATAGAGGCGTGGCTACAACAAACGATAGTTATAAGTATACATGGTTTGAGGACCACGAAAGTGTGATAAAAGCGATTTACACGGGCCGTGAATATGTTGAACATGTTGATGCTGGCGTTGATGTTGGTATAGTTCTTGAGAGCACAAGTTTCTATGCCGAACAAGGTGGTCAGATATTTGATACTGGACTACTCGAAGGCCCTCTTGGACCGTTTGTAGTGAGCGATGTTCAAGTTTATGGTGGTTTTGTGATACATCTGGGTAAAGTTACTGGGTCTGCCAAGTTTCATGTTGGTGATGAAGTTATATGCAAGGTTGATTATGAAAGGCGGCAGCGGATTGCTCCAAACCACACCTGTACACACATGTTAAATTTTGCACTCAGGGAAGTCCTAGGAACTCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAACTAAGATACGACTTCTCCCATGGGAAGCCTGTAAAGCCGGAGGAACTTCGCAGAATTGAATCTATTGTGAATGAACAAATTAAAGCTGAGTTAGATGTTTCTGCGAAGGAGGCAAGCCTTGCTGATGCAATGCGAATAAATGGATTACGAGCTGTTTTTGGTGAAGTGTATCCTGATCCGGTTAGAATTATTGCAATTGGTCAACAAGTTGATGATCTCCTTGCCGATCCTGAAGATAAAAAATGGTTGTCCATATCTGCAGAGCTCTGTGGAGGGACCCACATTTCAAATACTAGAGAGGCGAAGGCATTTGCACTTTTGTCCGAGGAGGGAATTGCCAAGGGGATTCGTAGAGTTACTGCTGTAACGACAGATCATGCTTTTGAGGCTATGAAAAAGGCTCAGGAACTTGAGCAGGAGGTTGACCTCGCATCGAAACTAGAAGGAAGCCTTCTTAAGGAGAAAGTGAAATTGTTAAATGGTCAAGTAGACTCCGCTGCTATTCCTAGCGCAAAAAAGGCTGATCTCAAGGCAAAAGTGCTTATTCTTTCGGATCAAGTAAATAAAGCAAAAAAGAAAACTGAGGAGGAGAACATACGTAAAGCTGTTGAAGCTGCCACTAAATCAGCAGAAGCTGCCGCTTCTGAGGGCAAGGCCTTTTGCATTACACATGTTGGAGTAGGATCGGATGCTGCTGCTATTCGTGATGCAGTTGTTAAAGTCATGGAGCAGAGGGGAATGGCAGTGATGGTTATCAGCACTGATGAACAATCGAAGAAGGCCTTAGTTTGTGCAGGGGTGCCAGTCAACAGCGATCAAAGCAACCACTTGAAGGTTAAAGATTGGCTGGATGCAGCACTCAACCCTCTAAAAGGCAAAGGTGGTGGTGGGAAAGGTGGTCTTGCTGCAGGCCAGGGACCCGGCATAGATAATGTAGATGAAGCAATTGACGTTGCTAAATCATTTGCAGCACTGAAACTGGGTTGA 3045 42.79 MKAQFTSKLNLLSSSSPFNRRSFPFLFSLPIINHYYYYNSKPRVCNLLNISTVATVIDSSMGSQSAAEVEWPANKVRKTFIEFFEQRNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTMVYKLPADRIYATYFGGDEKLGLPADSEAKNIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGREAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAQHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDSIQQATGARPYSGKVGPDDSDGIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKAQEEHIREVIADEEASFGRTLLHGIEKFKRTVQDVKGKSFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNTAMDEAREKSRNAQNKGNAGAIVMDAEATSILHNRGVATTNDSYKYTWFEDHESVIKAIYTGREYVEHVDAGVDVGIVLESTSFYAEQGGQIFDTGLLEGPLGPFVVSDVQVYGGFVIHLGKVTGSAKFHVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRYDFSHGKPVKPEELRRIESIVNEQIKAELDVSAKEASLADAMRINGLRAVFGEVYPDPVRIIAIGQQVDDLLADPEDKKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDHAFEAMKKAQELEQEVDLASKLEGSLLKEKVKLLNGQVDSAAIPSAKKADLKAKVLILSDQVNKAKKKTEEENIRKAVEAATKSAEAAASEGKAFCITHVGVGSDAAAIRDAVVKVMEQRGMAVMVISTDEQSKKALVCAGVPVNSDQSNHLKVKDWLDAALNPLKGKGGGGKGGLAAGQGPGIDNVDEAIDVAKSFAALKLG 1014
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00256 1014 FunFam Alanine--tRNA ligase, cytoplasmic 70 320 - -
Ecan3g00256 1014 Coils Coil 859 879 - -
Ecan3g00256 1014 SUPERFAMILY Translation proteins 570 645 IPR009000 -
Ecan3g00256 1014 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 71 819 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Ecan3g00256 1014 SUPERFAMILY ThrRS-AlaRS common domain 645 818 IPR018163 GO:0000166(InterPro)
Ecan3g00256 1014 SUPERFAMILY Class II aaRS and biotin synthetases 72 323 IPR045864 -
Ecan3g00256 1014 CDD AlaRS-core 73 319 - -
Ecan3g00256 1014 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 324 523 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Ecan3g00256 1014 FunFam Alanine--tRNA ligase 901 1009 - -
Ecan3g00256 1014 Pfam tRNA synthetases class II (A) 75 649 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Ecan3g00256 1014 Hamap Alanine--tRNA ligase [alaS]. 71 1013 IPR023033 GO:0004813(InterPro)
Ecan3g00256 1014 Coils Coil 813 833 - -
Ecan3g00256 1014 SMART tRNA-SAD-4 747 806 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ecan3g00256 1014 Gene3D Bira Bifunctional Protein; Domain 2 72 320 IPR045864 -
Ecan3g00256 1014 Gene3D - 542 645 - -
Ecan3g00256 1014 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 747 805 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ecan3g00256 1014 Gene3D - 646 822 - -
Ecan3g00256 1014 PANTHER ALANYL-TRNA SYNTHETASE 68 1010 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Ecan3g00256 1014 NCBIfam alanine--tRNA ligase 75 991 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 Gene3D - 901 1009 - -
Ecan3g00256 1014 PRINTS Alanyl-tRNA synthetase signature 149 160 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 PRINTS Alanyl-tRNA synthetase signature 385 398 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 PRINTS Alanyl-tRNA synthetase signature 361 377 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 PRINTS Alanyl-tRNA synthetase signature 304 317 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 PRINTS Alanyl-tRNA synthetase signature 277 288 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ecan3g00256 1014 Pfam DHHA1 domain 874 1008 IPR003156 GO:0003676(InterPro)
Ecan3g00256 1014 FunFam Alanine--tRNA ligase, cytoplasmic 646 821 - -
Ecan3g00256 1014 Coils Coil 502 522 - -
Ecan3g00256 1014 FunFam Alanine--tRNA ligase 545 644 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00256 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2139197 Ecan Ecan1g00490 Ecan-Chr1:7434550 Ecan3g00256 Ecan-Chr3:2890381