AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g00260 ATGGGCTGCAAGAATAGACAACAATTTCAAGAAAAACAAGAACAAGATAAAAGATCATCATCATCAAAACATGTTAATGATGCTTTGTTGTTGACAACTATGTGTCTCATTGGTCTCTCTGTTGATGTTCATATCAAAGATGGCTCTGTTTATTCTGGAATCTTTCACACTGCTTCTGTTGATGACCATTATGCAATCGTATTGAAGTCTGCAAAGATGATCAAGAAAGGGACCTGTAAATCGAATGTGGCGAGTGAGGATGTCATAGAAACACTTGTAATCCATTCAAAGGATCTTGTTCAAGTGGTACCAAAGAAAGTTTTGCTTCCAGCCAATGGTTCTGCAGGACATGAAACTGGAGACAATACAGTGGCTGTTGCATGCACTCCACCTTCTAATGGAACTCCATTGGCAGAAGGAAACAAAATATCTAACAAGCCAAATGTTGGTCAAGCGCATGCTAATCAAACAAGATGCTCATCCGGAACTGAAAATGGGTTTGCTAATGGACTTAGACCCGAAATCTCTCACCCTACCAATGCTCATCAAGTGCAAGCTAAAACGTCTATAGTCAGTGCTCCTTCCACAGTCTCTTCAGAACCATTAGTCAGCTCATCAGCTCCAAGTGAAACCGTCACTTCAAAAATCTCAAATCGAGCTTCTAAGGAGTTTAAACTTAACCCTCAAGCAAAGATATTTTCTCCATCATTTCCAAATAAGAGATCAACGACCCCTCCAGCAATTGCTAACAATACAAATCTTGCATACATTCACGACAGTTATCAAGCTGTCCCGGTTGCCACCCAACAGCCGGAAGTTGAAATCAGCCCGTATGCTCCTCGTTCCCTGCCCCTTAAGTTTCTTCCATATGGAGGCAATGATGTACAACATCCTCAGCCAGTTATCGGATATATGCACAGGGCTCAGCCAGTCAGAAATGGTGGGCAATATCATCAAGTTCAGACGGCCCCTACTTATGTCCAGCCAAGTCCTCAGAATGTAATGGTTGGAAGATTGGGACCGGTTGTCTACGTTCATCCAGTTTCTCAGGACATCGTCCCGAGCACAACTGGCTTCCCTCAGATGTCTACATGCTCCATCTTAACTCCCCACCAAATCCATGTCCCTAAACACCAAGTAAATGCAGCAGGTCAAGCATTACAGTTATGTGCAACTCCTCCTTTTATAGCCGCAGGTGGTGGTCAGGCACCTTTTGTTTTGCCAAGCCACATTCCCATTTCGCAACCACCTTACCCTATGATCCGCCCAATGTCGGTCCCCGGATCCAACGGTTACTTTGTATCAAAGTTTTCTTAG 1317 43.66 MGCKNRQQFQEKQEQDKRSSSSKHVNDALLLTTMCLIGLSVDVHIKDGSVYSGIFHTASVDDHYAIVLKSAKMIKKGTCKSNVASEDVIETLVIHSKDLVQVVPKKVLLPANGSAGHETGDNTVAVACTPPSNGTPLAEGNKISNKPNVGQAHANQTRCSSGTENGFANGLRPEISHPTNAHQVQAKTSIVSAPSTVSSEPLVSSSAPSETVTSKISNRASKEFKLNPQAKIFSPSFPNKRSTTPPAIANNTNLAYIHDSYQAVPVATQQPEVEISPYAPRSLPLKFLPYGGNDVQHPQPVIGYMHRAQPVRNGGQYHQVQTAPTYVQPSPQNVMVGRLGPVVYVHPVSQDIVPSTTGFPQMSTCSILTPHQIHVPKHQVNAAGQALQLCATPPFIAAGGGQAPFVLPSHIPISQPPYPMIRPMSVPGSNGYFVSKFS 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g00260 438 PANTHER ATAXIN 2-RELATED 146 423 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Ecan3g00260 438 MobiDBLite consensus disorder prediction 9 23 - -
Ecan3g00260 438 MobiDBLite consensus disorder prediction 1 23 - -
Ecan3g00260 438 Pfam Ataxin 2 SM domain 26 103 IPR025852 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g00260 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2126311 Ecan Ecan3g00259 Ecan-Chr3:2909509 Ecan3g00260 Ecan-Chr3:2909509