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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01774 ATGATGAGCATTCATGGCAGTCTTCTTGAAGTCACGGTTGTTAGCTGCAGTAAACTGAAAGATACGGAATGGTTATCTAGGCAAGATCCTTATGTCTGTGTCGAATATGGTAGCAATAGATCTACCACGCGTACCTGTACAGATGGAGGCAAGAACCCTACATTCCAAGAGAAATTTGTGTATTCCCTAGTTGAGGGCCTAAGAGAGATCAACGTTGCCGTTTGGAATAGTAATACTGTCACACATGATGATTACATAGGTAGCGTAAGGATTCCATTGACAAAGGCTCTTTCTCATGGATTTGATGATAGTACCTGGCCATTACAAAGTAAAACTGGCAGGCATGCTGGAGAGGTTCGATTGATAATGCATTATTCCAATGGCAATAAACCATCTAAAAGTTTAGCTCCATCGTATGCTCCACATAACGCACCTCCGGTTCCTACGTACTCTGCTCCACCACCAGCTGCATATTATCCTCCAACTCCCTACCCATCCTACGCACCTAATTCAGGTGGCTATCCACCGGCTCCATATCCACCTCAGGCAACTACTTATCCTCCGACGCCTTATCCACCTAATCCAGCTTATGGATCCCATTATCCCCATGGTTCTCCATTTCCAGGGACTTATCCTCCACCACCATATTGA 651 45.01 MMSIHGSLLEVTVVSCSKLKDTEWLSRQDPYVCVEYGSNRSTTRTCTDGGKNPTFQEKFVYSLVEGLREINVAVWNSNTVTHDDYIGSVRIPLTKALSHGFDDSTWPLQSKTGRHAGEVRLIMHYSNGNKPSKSLAPSYAPHNAPPVPTYSAPPPAAYYPPTPYPSYAPNSGGYPPAPYPPQATTYPPTPYPPNPAYGSHYPHGSPFPGTYPPPPY 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01774 216 MobiDBLite consensus disorder prediction 170 216 - -
Ecan3g01774 216 Gene3D C2 domain 7 127 IPR035892 -
Ecan3g01774 216 CDD C2 9 106 - -
Ecan3g01774 216 SMART C2-3c 8 105 IPR000008 -
Ecan3g01774 216 Pfam C2 domain 8 99 IPR000008 -
Ecan3g01774 216 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Ecan3g01774 216 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 6 127 IPR035892 -
Ecan3g01774 216 MobiDBLite consensus disorder prediction 170 199 - -
Ecan3g01774 216 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 4 214 IPR052981 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01774 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84738 Ecan3g01774 Ecan4g02457
84739 Ecan3g01774 Ecan5g01341
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr1:38565231 Ecan3g01774 Ecan-Chr3:29044985 transposed
Ecan Ecan-Chr3:29044985 Ecan4g02457 Ecan-Chr4:34670427 wgd
Ecan Ecan-Chr3:29044985 Ecan5g01341 Ecan-Chr5:26833999 wgd