AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01791 ATGTTTCAATTATTCCTTTCACTTATCAATAATTCATCAAATAAAACATATACTAATAGAAATACTAACAATAATGCAGATAATGAAGACGGAGATATCTGCCGTATATGCCGCAATCCAGGTGACGCCGATAATCCGTTGCGGTATCCGTGTGCTTGTAGAGGAAGTATAAAGTTTGTTCATGAGGACTGTCTTCTTCAATGGCTCAATCTCCGCAACGCTCGTCACTGCGAGGTTTGCAAACACCCCTTTTCGTTTTGTCGTGTGTATGCTGATAATGCCCCAGCAAGGCTTCCTTTTTGGGAAATTGTTATTGGAATGGCAATGAAATTCCATCAGATGGTGCAGCTCTTCATGCGTCTTAGTTCTGAGCTTTCTATGTGGTTTTTGATCTTACCATTTATTACTTTCTGGACATGGAGTTTCTCATTTGCAAGGAGCTTTGGTGAAGCCCAAACACTGTTCTTGAGTCACATCTCAACTACATCCATTATTACTGATTGTGCTCGTGGGTTCCTTCTTTCTATAAGCATCGAATTTATCACCATTGCTGTGAAGTGTTTAAGGTTACTAGAGCATAGAGGACTGGAAAGGGAAAGGGAGAATGAAGATGATGGAAATGGTGCTCATGATGGAAGGATACAACCTGCTCAAGTAAATCAAAACCTTATTGGTGAAGGGAATGGTGGAGATGTTGGGGCACAGGGTATTGGCAGGGTAGCTCAGATTGTCAGAAGGAATGCAGAGGATGCTCCTTTTGAGTTGTTAGCTGGCATGCAAGGGCATATCTTCCATTTGGTAGAAATTGCTTATAAGGTTCTTGCACGCGACATTATGTTTCTTGGCTTTGTAGCTTTTGTGCCTTTCCACCTAGGACGATTTATCCTCTACAATCTACCGTGGATTTTATCATCTGCCACCAGCTCAATGGTGCCACTTGTTGCACTGCATACTCAGCAAGCACTTTCCTTGGCCAATATTATATCAAGGAATGCATCGACTGCACTCACAAATATGACTTCTGAGAAAAGTCTTGAAGAAGTGACAAATGTTATTGCTACTAGACACGATGGGTCACCAAACAATGTTACAAGGCATGTTTTAGTTGACTTTCTTAAAGGGGGAATTGGTGGGGAAACCAGACTCTCGGATGCTACAACTCTTGCAGTTGGATACATGTTCATTTTCGCAGTAGTTATTATCTGCCTTGGGGTAGTTGCACTAGTTAGGTACTGCAGGGCGGAGCCTCTGGTCATTGGAAGGTTCTGTGGCATTGTTTCAGTTGTAGGGTCACTTTTCAGACTGTTATTACTTGCAATGATAATGCTTATGATAAAGTTTGTTTTCTTCACTCTAATGCTTGGATGGTGGATAGATGTGTGTACATTAAGGATGTTTGGCAAGTCAATTGCTCAAAGAGTTGAATTCTTTTCGGTATCTCCATTGGCAAGCTCATTGATTCACTGGGTTGTAGGAATTGCCTACTTATTACAACTAGTCATATTTGCCATGTTTCTTCGAAGGGTTCTGCGTCATGGAGTTCTTTATTTCTTGCGAGATCCAGATGATCGTAATATGAATCCACTCACGAATGTTAATCTTACGGATAGATATGCTCTTAACATTCTTTTGTCAAATGCTTTTCACGTGAGCATAATCGTACTATTGGTATTTTTGCCAGTTAAACTTGCTATGTGGATAGCTCCTTCAATCTTCCCTCTGGATATATCAGTATCCGTCTCATTCACTGAGATTCCTAATTACATACTTTTCTTTCAAATTCTCATTCCATTTGCTGTTGAGCATTTTAAGATGCATGCAACAATCAAGTCACTTCTGCTCCATTGGTTTACTGCGGTCGGTTGGGCTCTTGGTTTAACAGATTACTTATTGGGCAGACATGAGGACAGTGGGCAAGTAATTGAGAATGATCTAGGAGGGCGGGATAGGATACATGATCAACTAGGGGGCGAAGATCGAGCTGTATTTGGAGATGTTCCCTCCGAATACTTGAACCAAGAAGGAGCCAATGCTAACTCTGCAGAAGAAGCTGATGGTGGTGGACACTCTGATTTAGAGAGATATGCGTTTGTTCGAGGTATAGTGCTTCTTTTAATGATGGCTTGGATGACATTGCTGATCGTCATTTCTGCTTCAATTGTGGTGCCCTTATCCATTGGACGAGTGTTGTTGAATGCTTCTGTTCGCTTCCTCCCCATCAGTCATGGCACAAACTGCAGGGACATGTATGCATTTGCTATTGGAAGTTATGTCATCTGGGCCGCCCTTGCTGGAATAAGGTACTGTGTAGATCTGATTAGAACAAGGAGAGCTACAGTGCTGCAAAATAAAATCTGGAAATGGTGTGCCATAGTTGTGAAGTGCTCCGTATTGTTGTTAATTTGGTATTTTTTTATCCCGGTGTTGATTGGACTGGTGTTTAAACTTTTGGTATCTCTACCAATGTTGGTATCTGTGGAAGAAAGCCTAGTGTTCGTGCTGTATTATGATTGGGCGATTGGACTTGGTGTTCTCAAGCTCTGGATTTGGCTGGTCATGCTCGGTTATACGATACCTCTTATCAATAGAAGCTGGCAAGCAACGTTCAGATTTGTAATGGTAGTTGGCCTTTCAAGGCTGCCAGCTCGTATGGTGCTACGAGAGATCATGGCCCCCATCATGATGAAGCTTCTTACGGCTCTTTGTGTCCCTTATGTATTAACCCGTGGAGTATTTCCTCTATTTGGGTACAGTTTAGCAGCTAACTCTGCTGTTTATAGGTTTGCATGGCTGGGATGCCTTGGTCTGAGTTTATTGTGCTTTTGTGCCAAGAGGTCACATTTCTTGTTCACCAATCTCCACAACTCAATAAGAGATGACCGCTATTTGATTGGCCGGGGACTTCATAACTTTGGGGAAGCTTAA 2925 42.02 MFQLFLSLINNSSNKTYTNRNTNNNADNEDGDICRICRNPGDADNPLRYPCACRGSIKFVHEDCLLQWLNLRNARHCEVCKHPFSFCRVYADNAPARLPFWEIVIGMAMKFHQMVQLFMRLSSELSMWFLILPFITFWTWSFSFARSFGEAQTLFLSHISTTSIITDCARGFLLSISIEFITIAVKCLRLLEHRGLERERENEDDGNGAHDGRIQPAQVNQNLIGEGNGGDVGAQGIGRVAQIVRRNAEDAPFELLAGMQGHIFHLVEIAYKVLARDIMFLGFVAFVPFHLGRFILYNLPWILSSATSSMVPLVALHTQQALSLANIISRNASTALTNMTSEKSLEEVTNVIATRHDGSPNNVTRHVLVDFLKGGIGGETRLSDATTLAVGYMFIFAVVIICLGVVALVRYCRAEPLVIGRFCGIVSVVGSLFRLLLLAMIMLMIKFVFFTLMLGWWIDVCTLRMFGKSIAQRVEFFSVSPLASSLIHWVVGIAYLLQLVIFAMFLRRVLRHGVLYFLRDPDDRNMNPLTNVNLTDRYALNILLSNAFHVSIIVLLVFLPVKLAMWIAPSIFPLDISVSVSFTEIPNYILFFQILIPFAVEHFKMHATIKSLLLHWFTAVGWALGLTDYLLGRHEDSGQVIENDLGGRDRIHDQLGGEDRAVFGDVPSEYLNQEGANANSAEEADGGGHSDLERYAFVRGIVLLLMMAWMTLLIVISASIVVPLSIGRVLLNASVRFLPISHGTNCRDMYAFAIGSYVIWAALAGIRYCVDLIRTRRATVLQNKIWKWCAIVVKCSVLLLIWYFFIPVLIGLVFKLLVSLPMLVSVEESLVFVLYYDWAIGLGVLKLWIWLVMLGYTIPLINRSWQATFRFVMVVGLSRLPARMVLREIMAPIMMKLLTALCVPYVLTRGVFPLFGYSLAANSAVYRFAWLGCLGLSLLCFCAKRSHFLFTNLHNSIRDDRYLIGRGLHNFGEA 974
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01791 974 FunFam Probable E3 ubiquitin ligase SUD1 19 92 - -
Ecan3g01791 974 CDD RING-CH-C4HC3-MARCH6 33 82 - -
Ecan3g01791 974 PANTHER SSM4 PROTEIN 19 973 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Ecan3g01791 974 ProSiteProfiles Zinc finger RING-CH-type profile. 26 87 IPR011016 GO:0008270(InterPro)
Ecan3g01791 974 SMART ringv-2 33 81 IPR011016 GO:0008270(InterPro)
Ecan3g01791 974 SUPERFAMILY RING-U-box 27 85 - -
Ecan3g01791 974 Pfam RING-variant domain 34 80 IPR011016 GO:0008270(InterPro)
Ecan3g01791 974 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 18 93 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01791 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84742 Ecan3g01791 Ecan4g02460
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29113169 Ecan4g02460 Ecan-Chr4:34705690 dispersed
Ecan Ecan-Chr3:29087514 Ecan3g01791 Ecan-Chr3:29113169 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g02087 ACH 68 118 HMGR gene family AT4G34100 43.137 3.34e-10 58.9
Ecan8g02880 ACH 68 129 HMGR gene family AT4G34100 37.097 1.12e-08 53.9
Ecan8g00733 . 51 632 HMGR gene family AT1G76490 70.588 0.0 849.0
Ecan8g02978 ACH 37 142 HMGR gene family AT4G34100 32.407 1.31e-11 62.8
Ecan9g01014 ACH 68 135 HMGR gene family AT4G34100 36.232 1.52e-09 55.5
Ecan1g02625 ACH 45 129 HMGR gene family AT4G34100 30.588 5.83e-09 54.7
Ecan1g02626 . 45 129 HMGR gene family AT4G34100 30.588 5.83e-09 54.7
Ecan1g02627 . 45 129 HMGR gene family AT4G34100 30.588 5.83e-09 54.7
Ecan2g02031 . 51 633 HMGR gene family AT1G76490 71.597 0.0 862.0
Ecan2g01540 . 68 131 HMGR gene family AT4G34100 40.299 6.20e-10 57.4
Ecan2g02628 . 68 129 HMGR gene family AT4G34100 40.323 1.76e-09 56.2
Ecan3g01790 . 67 1104 HMGR gene family AT4G34100 74.76 0.0 1563.0
Ecan3g01791 ACH 67 1068 HMGR gene family AT4G34100 55.511 0.0 1030.0
Ecan3g03124 ACH 67 131 HMGR gene family AT4G34100 34.328 7.37e-11 59.7
Ecan4g02068 ACH 39 136 HMGR gene family AT4G34100 32.653 8.04e-11 60.5
Ecan4g02460 ACH 67 1080 HMGR gene family AT4G34100 71.681 0.0 1479.0
Ecan4g00417 . 96 632 HMGR gene family AT1G76490 67.883 0.0 762.0
Ecan1g02056 . 53 632 HMGR gene family AT1G76490 71.012 0.0 839.0
Ecan7g00907 . 196 632 HMGR gene family AT1G76490 78.947 0.0 726.0
Ecan7g01106 ACH 35 124 HMGR gene family AT4G34100 33.333 1.13e-09 56.6
Ecan7g01107 . 35 124 HMGR gene family AT4G34100 33.333 7.16e-10 57.0