AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01795 ATGAACAAAAAGGCCCTGGCGGCCCTACTTTCATCCCTCATTTCAGACCTCTTAACCACCCTCTTAACCATCCCCCATACTTCCGGCAACCCATCATCTTTTCCGATCACCCCTTTTCTCATCAACTTCCTTTCGATCTCACAAACCATCACCACTCTTTCTCTTCTTTCCAACAAACGAAAACGGCCCGAACTTGAAGATGAGCCCGTTATTAGCCCGTCTAAAACCACCCGTTATGTCCAAGAAACCTTTACCGGAATACCTAGAAGCCCGGATTCTTTTAACCTTTGTTTTAAGATGAAATCGTCTACATTCGAGTGGCTTTCGGCCTTACTTGAGCCTTTGCTTGAGTGTCGTGACCCGGTCAACGAACCTTTAAAGTTGCCCGTAGAAGCCCGACTTGGTATCGGGCTTTTTAGACTCGCTACAGGTTCTGACTACGTCGAGGTTTCTAGACGTTTTAATGTTTCAGAACCTGTAGCGAGGTTTTGTGTTAATCAGTTGTGTAGGGTGTTATGCACAGATTTTAGGTTTTGGGTTGGGTTTCCTAGCCCAAATGAGTTGGGCCCGGTTAGTGAATCGTTTGAGAGACTAACCGGGTTGCTAAATTGTTGTGGGGTTATACATTGTACTAGATTTTTTGACTTAGAGGAACAAGAGCCCATAGCTGCTCAAGTTGTTGTAGATTCATCTTCAAAGATTCTAAACATTTTTGCTGGATACAATGGGAAAAGTAGTAGTCAACTTGTGCTTAAATCGTCGAGTTTATATAAAGATATTGAGTCAAATAACTTGCTAAATGACCAACCTATAGATTTAAAAGGTGTATCTATACCACAATACTTGGTTGGTGATCAAGGCTACCCTCTTCTTTCATGGTTAATGGTTCCATTTGTCCAACCCATGGTGAATTCGAATGAAGAGAATTTTAACAAAGTACATAATTCAATGATGGTTTCGGCTTTTAGGACAGTTGATAGTTTGAAGAATTGGGGTGTTTTGAGTAAACCAATTAAGGAAAAGATTAAGACGATGGTGGCTTATATTGGTGCTTGTTCGATTCTTCATAATGCATTGCTTATGAGGGAAGATTATTCTTCTTTATCCGAAGAACAGGATGAATATCTGCGATATAGTGACAGCCCGAAATATCATATGGAGACTAGTTTTTTGCATAGTTCAAATGAGCAAAAGGCATTTGAAATTAGAAGTACATTGGCTACAAGAGTAAGAAGACGTTAA 1242 40.42 MNKKALAALLSSLISDLLTTLLTIPHTSGNPSSFPITPFLINFLSISQTITTLSLLSNKRKRPELEDEPVISPSKTTRYVQETFTGIPRSPDSFNLCFKMKSSTFEWLSALLEPLLECRDPVNEPLKLPVEARLGIGLFRLATGSDYVEVSRRFNVSEPVARFCVNQLCRVLCTDFRFWVGFPSPNELGPVSESFERLTGLLNCCGVIHCTRFFDLEEQEPIAAQVVVDSSSKILNIFAGYNGKSSSQLVLKSSSLYKDIESNNLLNDQPIDLKGVSIPQYLVGDQGYPLLSWLMVPFVQPMVNSNEENFNKVHNSMMVSAFRTVDSLKNWGVLSKPIKEKIKTMVAYIGACSILHNALLMREDYSSLSEEQDEYLRYSDSPKYHMETSFLHSSNEQKAFEIRSTLATRVRRR 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01795 413 Pfam DDE superfamily endonuclease 218 357 IPR027806 -
Ecan3g01795 413 PANTHER UNCHARACTERIZED 87 403 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01795 K23222 nuclease HARBI1 [EC:3.1.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29136740 Ecan4g03737 Ecan-Chr4:44889961 dispersed
Ecan Ecan-Chr3:29136740 Ecan5g00047 Ecan-Chr5:433956 transposed