AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01801 ATGAAGATATACAAATTCCAATGCCACGTGTCACTCACATTTCTCCTGCTCTTCACATACGCTTCAGCACTCAAGGAAGGACAGACGTGCGTGAACAATAACAACTGTGATTTAGGGTTACATTGTGAAGCTTGTGTTGCTGATGCAAATGTCCGCCCTAGGTGTACTCGTGTTAAGCCTGTTAGTCCTTTTTCTAAGGTGAAAGGATTGCCGTTTAATAAGTACTCGTGGTTAACGACGCATAATGCGTTTGCGAAATTAGGTGAGAAATCGGCTACTGGTTCGGTTATTTTAGCTCCGGAGAATCAGCAGGATTCTGTTACTTCTCAGCTTGATAATGGTGTGAGGGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCCATTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCAATCAATGTTCTGAAAGAGATTCGAATTTTCCTGGAAAACAATCCTACTGAAATAATAACTGTCATCATTGAGGATTATGTTACTTCCCGAAATGGTTTAACTAACGTCTTCAACGCTGCTGGTCTGAGGAAATATTGGTTTCCAGTAGCTAAGATGCCAAGTGATGGCAGAGATTGGCCAACAATTGACTCCATGGTCCAACAGAATCTCCGCTTGGTAGTATTCACTTCCAAATCTTCTAAAGAGGCTACTGAAGGGATTGCATATGAATGGAAGTACTTGGTCGAGAACCAATATGGAACGAATGGAATGAAGAATGGGTCATGCCCTAACCGAGCAGAGTCTGCTGCGATGAACATGACATCAAGGTCTCTAGTCTTAATGAACTACTTTCCAGATACCCCAGATTTTATCCAAGCTTGCAAGGACAATTCATCCCCATTAATAAGCATGGTCAAAACATGCCATGACTTATCCGGTAAACGTTGGCCGAATTTCATTGCTGTTGACTTCTACAAGAGAAGTGATGGCGGGGGTGCACCTGCTGCAGTAGATATGGCAAACGGACAGCTAGTTTGTGGGTGTAACACCGTTTCAGTATGCAGGCCAAAGATGACCTTTGGAGAATGTAACCTACCAGAGGCTAGTGATACTCCCGCCCCAGCTGCAGCAATAAAAAGCTCCGCTGGCATGCGTGCTCAACCGGGTCAACTTGGATGGTTGTTTGGTGCTGGGTTGATTGCTATAACCTTGTCATTGTAA 1206 43.7 MKIYKFQCHVSLTFLLLFTYASALKEGQTCVNNNNCDLGLHCEACVADANVRPRCTRVKPVSPFSKVKGLPFNKYSWLTTHNAFAKLGEKSATGSVILAPENQQDSVTSQLDNGVRGLMLDMYDFENDIWLCHSIGGKCFNYTAFQPAINVLKEIRIFLENNPTEIITVIIEDYVTSRNGLTNVFNAAGLRKYWFPVAKMPSDGRDWPTIDSMVQQNLRLVVFTSKSSKEATEGIAYEWKYLVENQYGTNGMKNGSCPNRAESAAMNMTSRSLVLMNYFPDTPDFIQACKDNSSPLISMVKTCHDLSGKRWPNFIAVDFYKRSDGGGAPAAVDMANGQLVCGCNTVSVCRPKMTFGECNLPEASDTPAPAAAIKSSAGMRAQPGQLGWLFGAGLIAITLSL 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01801 401 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 71 177 - -
Ecan3g01801 401 CDD PI-PLCc-At5g67130-like 62 336 - -
Ecan3g01801 401 SUPERFAMILY PLC-like phosphodiesterases 69 340 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ecan3g01801 401 Gene3D Phosphatidylinositol (PI) phosphodiesterase 65 327 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ecan3g01801 401 PANTHER UNCHARACTERIZED 33 349 IPR051057 GO:0008081(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01801 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84746 Ecan3g01801 Ecan4g02470
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:34420894 Ecan3g01801 Ecan-Chr3:29191035 dispersed
Ecan Ecan-Chr3:29191035 Ecan6g02049 Ecan-Chr6:31614088 dispersed
Ecan Ecan-Chr2:33055208 Ecan3g01801 Ecan-Chr3:29191035 transposed
Ecan Ecan-Chr2:34392167 Ecan3g01801 Ecan-Chr3:29191035 wgd
Ecan Ecan-Chr3:29191035 Ecan4g02469 Ecan-Chr4:34828429 wgd