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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01849 ATGGGAAACCTGAATCTATCTCCTGAACCAAGTTTGGACTTTAGACCAATTTTTATTCCAAAAACAATCACTATGTTTCTTGAAGAAGTATCGAAAATCGGTAGCTTAAGGGAGAAGTCACTACAAGTTGATCATTTTGTCCATCGGTTAGAATGCGAAACAAGATTAATAGAAGCATTTAAACATGAACTCCCTCTATCCATGCTTCTTATCAACGATGCAATTGCTGCTTTGAAAGAGGAATCAATGGTGTTAAAGAAGTCATCATATGTTGAACCGGTACTTGAAGAATTTATGCCAATTAAAAAATGTTTTGATAATGATGATGATATAAAAATTGAAGCCAATATTGGAAATCATCATAATGACATTAATGGTGATAAGAAGAATTGGTTGAGCTCTACTCATCTTTGGAATACTAATGAGAACCACGATCACAAAGCAAATTCATTCACACAAACGATTAAAAAGCGAAATGAGAAAGAAGATCCGAGTAATAGAGCAATTTTCAACCATGAAATCACTAGTCAAATGAGGGGAAGTGGTCTATTTGGTGAAGTAAATGGGAAAGGTAGATTGATTCCATTTTCTCCACCAAATGTTCAACCAAAAAATATACAAATTAGAGCCAGCATTGTGCATGCACCATTAAAACAGCAGACATCTAGGAAACAAAGGAGATCATGGTCAACCGAGTTGCATAGACGATTTGTCGATGCCTTGCAACGACTTGGAGGTTCACAAGTAGCCACCCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTTACCAATGACGAAGTGAAAAGTCATTTGCAAAAATACAGACTTCATACGCGGCGACATTCAACTTCAAATACAAGTGATCAAAATGTCGGATCCTCTAAATGTAGCAATTCTCAATCGGGTTCTCCTGATGGCCCCCTTCCGAATGGGAGTAGTAACATGGATGACGAAGACGATAAATCTGAGAACAATTGGTGGAATGGTAGCTAG 999 37.54 MGNLNLSPEPSLDFRPIFIPKTITMFLEEVSKIGSLREKSLQVDHFVHRLECETRLIEAFKHELPLSMLLINDAIAALKEESMVLKKSSYVEPVLEEFMPIKKCFDNDDDIKIEANIGNHHNDINGDKKNWLSSTHLWNTNENHDHKANSFTQTIKKRNEKEDPSNRAIFNHEITSQMRGSGLFGEVNGKGRLIPFSPPNVQPKNIQIRASIVHAPLKQQTSRKQRRSWSTELHRRFVDALQRLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRHSTSNTSDQNVGSSKCSNSQSGSPDGPLPNGSSNMDDEDDKSENNWWNGS 332
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01849 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 224 279 IPR006447 GO:0003677(InterPro)
Ecan3g01849 332 Gene3D - 223 281 - -
Ecan3g01849 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 325 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Ecan3g01849 332 Pfam Myb-like DNA-binding domain 226 277 IPR001005 -
Ecan3g01849 332 MobiDBLite consensus disorder prediction 276 332 - -
Ecan3g01849 332 MobiDBLite consensus disorder prediction 285 312 - -
Ecan3g01849 332 FunFam Myb family transcription factor 223 281 - -
Ecan3g01849 332 SUPERFAMILY Homeodomain-like 221 282 IPR009057 -
Ecan3g01849 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 281 IPR017930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01849 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
84759 Ecan3g01849 Ecan5g01388
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29568910 Ecan4g02501 Ecan-Chr4:35082383 dispersed
Ecan Ecan-Chr3:29568910 Ecan3g01849 Ecan-Chr3:29568910 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g03883 . 1 245 G2-like Transcription Factor family AT5G45580 52.713 3.67e-76 231.0
Ecan8g03917 ACH 1 386 G2-like Transcription Factor family AT1G32240 47.63 2.14e-81 253.0
Ecan8g03916 ACH 1 386 G2-like Transcription Factor family AT1G32240 47.743 6.84e-83 257.0
Ecan1g03819 ACH 203 386 G2-like Transcription Factor family AT1G32240 58.586 2.21e-61 200.0
Ecan1g03818 ACH 203 386 G2-like Transcription Factor family AT1G32240 57.868 3.60e-60 197.0
Ecan9g00260 . 172 319 G2-like Transcription Factor family AT5G06800 59.333 2.86e-54 177.0
Ecan9g00261 . 172 260 G2-like Transcription Factor family AT5G06800 59.341 4.44e-32 117.0
Ecan9g01110 . 13 146 G2-like Transcription Factor family AT2G01060 58.209 7.56e-53 171.0
Ecan9g00748 ACH 42 367 G2-like Transcription Factor family AT4G28610 52.174 1.53e-100 303.0
Ecan9g00749 . 42 367 G2-like Transcription Factor family AT4G28610 52.174 1.53e-100 303.0
Ecan9g02498 ACH 3 401 G2-like Transcription Factor family AT5G18240 49.412 1.41e-120 353.0
Ecan9g02497 ACH 3 401 G2-like Transcription Factor family AT5G18240 49.412 1.75e-120 353.0
Ecan9g00091 . 1 334 G2-like Transcription Factor family AT3G10760 52.459 5.31e-93 278.0
Ecan9g02142 ACH 8 271 G2-like Transcription Factor family AT4G13640 62.454 1.52e-112 324.0
Ecan9g00417 ACH 25 201 G2-like Transcription Factor family AT5G59570 55.376 2.58e-57 183.0
Ecan9g00263 . 105 345 G2-like Transcription Factor family AT5G06800 46.36 7.24e-64 207.0
Ecan9g00258 . 180 315 G2-like Transcription Factor family AT5G06800 61.765 8.04e-56 177.0
Ecan9g00259 . 180 315 G2-like Transcription Factor family AT5G06800 61.765 8.04e-56 177.0
Ecan9g00500 . 44 174 G2-like Transcription Factor family AT2G40260 57.246 1.92e-38 139.0
Ecan1g04865 ACH 1 276 G2-like Transcription Factor family AT3G24120 66.551 1.90e-125 357.0
Ecan1g04866 ACH 62 285 G2-like Transcription Factor family AT4G13640 63.636 6.48e-93 272.0
Ecan1g02370 ACH 1 79 G2-like Transcription Factor family AT1G14600 70.886 1.09e-32 119.0
Ecan1g02369 ACH 1 79 G2-like Transcription Factor family AT1G14600 70.886 1.32e-32 119.0
Ecan2g02233 . 57 355 G2-like Transcription Factor family AT4G28610 49.673 3.40e-74 234.0
Ecan2g02234 . 57 355 G2-like Transcription Factor family AT4G28610 49.673 3.40e-74 234.0
Ecan2g01514 ACH 44 196 G2-like Transcription Factor family AT2G40260 55.556 1.10e-45 159.0
Ecan2g03010 . 68 259 G2-like Transcription Factor family AT5G42630 43.621 2.13e-44 152.0
Ecan3g01849 ACH 10 306 G2-like Transcription Factor family AT4G37180 38.095 3.52e-47 161.0
Ecan3g01848 ACH 10 306 G2-like Transcription Factor family AT4G37180 37.798 1.08e-44 154.0
Ecan3g01085 . 47 342 G2-like Transcription Factor family AT2G40260 38.511 2.19e-40 145.0
Ecan1g02521 ACH 1 315 G2-like Transcription Factor family AT1G25550 41.42 7.26e-68 215.0
Ecan3g02602 ACH 2 335 G2-like Transcription Factor family AT3G10760 51.479 1.12e-72 224.0
Ecan4g00571 . 36 415 G2-like Transcription Factor family AT2G20570 45.433 1.68e-91 281.0
Ecan4g00515 . 1 260 G2-like Transcription Factor family AT2G01060 69.888 1.06e-122 350.0
Ecan4g02501 ACH 4 323 G2-like Transcription Factor family AT2G03500 37.535 1.19e-56 190.0
Ecan4g01860 ACH 10 311 G2-like Transcription Factor family AT1G25550 52.663 7.06e-100 298.0
Ecan4g01861 . 60 311 G2-like Transcription Factor family AT1G25550 49.65 6.11e-73 227.0
Ecan4g02059 . 25 223 G2-like Transcription Factor family AT1G69580 58.294 4.43e-75 232.0
Ecan4g02060 . 25 223 G2-like Transcription Factor family AT1G69580 58.294 9.44e-76 234.0
Ecan4g02062 . 25 223 G2-like Transcription Factor family AT1G69580 57.346 9.00e-75 231.0
Ecan4g02061 . 25 223 G2-like Transcription Factor family AT1G69580 57.346 1.20e-74 231.0
Ecan4g01024 . 42 110 G2-like Transcription Factor family AT2G42660 72.464 2.84e-30 115.0
Ecan4g01782 ACH 1 77 G2-like Transcription Factor family AT1G14600 70.13 5.13e-30 111.0
Ecan5g02033 . 14 163 G2-like Transcription Factor family AT3G12730 70.0 4.77e-71 223.0
Ecan5g01387 ACH 4 322 G2-like Transcription Factor family AT2G03500 35.792 2.35e-53 181.0
Ecan5g01388 ACH 4 322 G2-like Transcription Factor family AT2G03500 35.792 1.25e-51 176.0
Ecan5g00201 . 1 432 G2-like Transcription Factor family AT2G03500 48.008 8.43e-127 374.0
Ecan6g01105 ACH 18 401 G2-like Transcription Factor family AT5G18240 50.0 5.06e-111 327.0
Ecan6g01106 ACH 18 387 G2-like Transcription Factor family AT3G04030 51.546 1.80e-109 323.0
Ecan6g03348 ACH 44 360 G2-like Transcription Factor family AT2G40260 38.941 9.24e-49 168.0
Ecan7g01842 ACH 1 279 G2-like Transcription Factor family AT3G46640 50.779 6.50e-86 260.0
Ecan7g02289 ACH 56 376 G2-like Transcription Factor family AT4G28610 50.729 4.27e-95 288.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ecan Myb_DNA-binding 4.9e-07 CL0123 TF GARP-G2-like