AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01854 ATGGAAAAACAAATTGGTTCTACTGTATTGTTAGATGTACCATTCGAGTGGTCAGGCGATAGTAGTCTAGAGGTGTTTACAGACGCGATTGAGGTCGATGCTAAAAGTTCTACGACACGGTCAAAACGTATAGTCATTAACCTATCGATCATGGAAACGTTACAAGATCTTATCGAAGAAGCAAAACTTCGTACTGTTTGGTGGGGCGTTTGTATTTTCATCGTTACTTATGTCTTAACTCACACAAGTAAATCAATGTGGATGAATGTACCTATAGCAATACTTTTGGTAGCAGGGATTCATATTTTGTTAACAGAAGTCGATTTTCGATGGAAGAACAAGAAATCAAACCGACAATCATATTTGTCACACCTAGAGAAGAAACAAATGTCTGTTAATGATTCTAGGCTTTCGACATTGCCTCCTCCGCCTAAATGGAAGAGAAAGATTGATTCTCCGATAGTCGAGGCTGCTTTGGATGATTTTGTTCACAAACTTTTGCAAGAGTTTGTTGTTGATATGTGGTATTCGGGTATAACGCCCGATAAGGAAGCCCCAAAGTTGCTTCACACGGTTATTATGGATATTCTTGCTGAGATTTCGATTAGAGTTAAAGATATAAACCTTGTTGACTTGCTTACGAGAGATGTAGTTGATCTAGTAGGAGATCACTTGGAGCTTTTTAGGAAAAACCATATCGCTATTGGACGGGAGGTTATGGTGACATTGTCTTCTGAAGAGCGAGATGAACGGTTGAAACATCATCTTATGGCTTCTAAGGAGCTTCATCCTGCTTTGATATCCCCCGAGAGTGAGTACAAGTTTCTTAAGCGGGTTATGGGAGCGCTTTTGGCTGCAGTACTAAGACCACGGGAAGCCCAATGCCCATTAGTTCGATGTATTGCACGTGAGCTCTTAACATGCACAGTAATGGAACCTGTAATGAGATTTGCAAGCCCTGGGCAAGTTAATGAGTTGATTGAGGCTATTTTCTTAGCCAAAAATAACAAGGGAGATAATGAGGAAGGTAATGATCAGTCATCTAATGTCACGGGTCAAACTCAGAATCAGCCCGCAGCTGCAAACAATCTAAAAAGCGTAGAGTCTGCTTCCCTAAAAACAGGCTCTTCAAGTGGTCAAAAGAGTGATGAAAAGACACAATTTACACTTGATGATCAAAAGAAAGCGGGTTTAAATCCACCTGGGACCATTGTCGGTGATCTGGTTCAAGATGAATCTGTGCAACAACCGTCATCTGCTTGGGCTCGAGTTCTTGAGGCAGCAACCCAAAGAAGGACAGAAGTTCTTCAGCCAGAAAATCTTGAAAATATGTGGACCAAAGGAAGAAACTATAAAAAGAAAGCTGAGAAGAAAGGTGCTTCAGAACAAAACAGTAGTGGACCTAATGAGAATTCAAACGATCAACAAAGAGAGCAGAATCTTGATGGTGGAATTTCGTGTGATCAAAGCAAGCCATCGGGCCCTTCTGAGACAGTTGATGAAAATTCTAATAGTAATGCTTCATTAGAAAGATCAAATAGTGCTTTAGATTTGAACAATAAGACTCAAACCGAACCTTCAGGTGCAATCCAAGTAGGTGGATTAGTAATCCCAGAGTTTTATAACGCGAATGTTGGCGGTGAGAATGATGTGCGCAATGCCAATACAGTATCTGATAAAGTAACACGTACCGAAGGATATATTCCAAAGCTCAGGTGTCGGGTTCTAGGAGCATACTTTGAAAATCTTGATTCAAATCCATTTGCAGTGTATTCGATTGCAGTAACGGATGTGGATAACAAAACTTGGTTTGTGAAAAGAAGATATAGAAATTTTGAGAGATTGCACCGTCAGCTTAAAGATATTCCTAATTATTCATTACATTTGCCTCCTAAAAGGATATTCTCATCTAGCACAGAGGATGCATTCGTTCATCAACGTTGTATACAGCTTGATAAATATCTTCAAGATCTGTTGTCTATAGCTAATATCGCCGAGCAACATGAAGTATGGGACTTCTTGAGCATGTCTTCTAAGAGTTACTCTTTTGGAAGGTCATCATCGGTGGTGAAAACTTTAGCAGTCAATGTGGATGATGCTGTGGATGATATTGTGCGTCAATTCAAAGGAGTTTCAGGAGGTTTAAAGCGGAAAGTTGTTGCCCCGGGTTCTCCATCTGAAGCTTCTGGAATATTTACTAATAAAAATGTTTCTTTAAAATCTGATGAAGCAATTGGTTCAATGACCAAGCAGACTACCTCAGGTAGCGCTAATAGTTTTTCCGACTATGAAGGAAGTGATAAAGATGGCACACTTCACCTTGAGGACTCAGAGTCTGCTAATGAGCAGAATCTGGATAATGATTTGAAGTCAAAAGACGATAAAAGCTTAGAGTTGGATAAGAAAATGAGTTCAGAGGATCGGTCTGAAATACTTGGCCTCACTGCAAACCTTACATCAACTTCTGGTCTCAAGGAAGATCCTCTTGGTGTGCCAGCAGAGTGGGCACCGCCTAATGTAAGTGTTCCGTTGCTAAACTTAGTGGACAAGATATTTCAACTCAAGAGAAGAGGATGGTTAAGGCGACAAGTCTTTTGGATATCAAAGCAAATATTGCAGCTAATGATGGAAGATGCTATTGATGATTGGTTGTTAAGGCAAATTCATTGGCTCAGAAGAGATAATGTGGTTGCTCAAGGAATTCATTGGGTACAAGATATTCTATGGCCCGAAGGTACATTCTTTCTGAAACTACGAGCGAGTCAAACAGATTCTGTTCAGTCAAACGATGGTTCATTGCAGAACCAATCTGGTAGTAAAAACAATAAACAAGGGTCCTTTGAGGAACAGCTTGAGGCTGCTCGTCGAGCTAGCGATATAAAAAAGATGATCTTCAAGGGAGCACCTACTACATTGGTTAGTTTAATCGGGCATAAGCAATACAAACGTTGCGCTAAAGATGTATATTATTTTCTCCAGTCCGCTGTGTGTTTGAAGCAACTTGGATATGGTTTACTAGAACTTGCACTCATTACAGTCTTCCCGGAGCTGCAAGACATTATATTAGATGTTCATGAGAAGAAAAAAGACGAAAAGGTGTAG 3102 40.17 MEKQIGSTVLLDVPFEWSGDSSLEVFTDAIEVDAKSSTTRSKRIVINLSIMETLQDLIEEAKLRTVWWGVCIFIVTYVLTHTSKSMWMNVPIAILLVAGIHILLTEVDFRWKNKKSNRQSYLSHLEKKQMSVNDSRLSTLPPPPKWKRKIDSPIVEAALDDFVHKLLQEFVVDMWYSGITPDKEAPKLLHTVIMDILAEISIRVKDINLVDLLTRDVVDLVGDHLELFRKNHIAIGREVMVTLSSEERDERLKHHLMASKELHPALISPESEYKFLKRVMGALLAAVLRPREAQCPLVRCIARELLTCTVMEPVMRFASPGQVNELIEAIFLAKNNKGDNEEGNDQSSNVTGQTQNQPAAANNLKSVESASLKTGSSSGQKSDEKTQFTLDDQKKAGLNPPGTIVGDLVQDESVQQPSSAWARVLEAATQRRTEVLQPENLENMWTKGRNYKKKAEKKGASEQNSSGPNENSNDQQREQNLDGGISCDQSKPSGPSETVDENSNSNASLERSNSALDLNNKTQTEPSGAIQVGGLVIPEFYNANVGGENDVRNANTVSDKVTRTEGYIPKLRCRVLGAYFENLDSNPFAVYSIAVTDVDNKTWFVKRRYRNFERLHRQLKDIPNYSLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQDLLSIANIAEQHEVWDFLSMSSKSYSFGRSSSVVKTLAVNVDDAVDDIVRQFKGVSGGLKRKVVAPGSPSEASGIFTNKNVSLKSDEAIGSMTKQTTSGSANSFSDYEGSDKDGTLHLEDSESANEQNLDNDLKSKDDKSLELDKKMSSEDRSEILGLTANLTSTSGLKEDPLGVPAEWAPPNVSVPLLNLVDKIFQLKRRGWLRRQVFWISKQILQLMMEDAIDDWLLRQIHWLRRDNVVAQGIHWVQDILWPEGTFFLKLRASQTDSVQSNDGSLQNQSGSKNNKQGSFEEQLEAARRASDIKKMIFKGAPTTLVSLIGHKQYKRCAKDVYYFLQSAVCLKQLGYGLLELALITVFPELQDIILDVHEKKKDEKV 1033
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01854 1033 SUPERFAMILY PX domain 571 678 IPR036871 GO:0035091(InterPro)
Ecan3g01854 1033 CDD PX-SNX19-like-plant 571 675 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 748 804 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 766 804 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 748 765 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 337 363 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 926 948 - -
Ecan3g01854 1033 SMART PX-2 567 677 IPR001683 GO:0035091(InterPro)
Ecan3g01854 1033 Pfam PX domain 599 675 IPR001683 GO:0035091(InterPro)
Ecan3g01854 1033 ProSiteProfiles PX domain profile. 569 681 IPR001683 GO:0035091(InterPro)
Ecan3g01854 1033 Gene3D - 573 685 IPR036871 GO:0035091(InterPro)
Ecan3g01854 1033 Pfam Sorting nexin C terminal 859 994 IPR013937 -
Ecan3g01854 1033 ProSiteProfiles PXA domain profile. 152 335 IPR003114 -
Ecan3g01854 1033 PANTHER PX SERINE-THREONINE KINASE PXK 53 1029 IPR051837 -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 461 511 - -
Ecan3g01854 1033 SMART PXA-3 152 335 IPR003114 -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 438 511 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 342 363 - -
Ecan3g01854 1033 MobiDBLite consensus disorder prediction 446 460 - -
Ecan3g01854 1033 Pfam PXA domain 152 329 IPR003114 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01854 K17925 sorting nexin-13
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Event-related genes

Select Gene_1 Gene_2 Event_name
84761 Ecan3g01854 Ecan4g02511
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29604408 Ecan2g02766 Ecan-Chr2:37232515 dispersed
Ecan Ecan-Chr3:29604408 Ecan4g02511 Ecan-Chr4:35127359 wgd