AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01863 ATGGGAGGAAAGAATTTCCTAAGGATGATGACAGATCAAACTGCATCAGAAGCAGCAACCAAAATGATCAGCTCAGACTGGAACGAACTCGGAGATGCAACTAAGAATCTTGCAACTCATGTGATCGCCCTTGGTTACAGTGGTGGTTTCATTACCACTGTCCTTCAATGTTTCGCATGTATAGCTGCCATATATTTGTTGGTAATAGATCGAACAAACTGGAGGACAAAGATGCTTACTACACTTCTTGTTCCTTATATCTTTTTGACGTTTCCTAATTGGCTTTTCGACACTTTGAGAGGAGATATTGGCAAATGGATCACTTTCGTTGGAGTCGTATTGCGTCTTTTCTTCCCTGAATATTTTAAAGAATATATGTTGTTGCCGGGTGCTTTGATCCTCTTGGTTGTGATAGCACCAAGCTTGATCGCTTATTATGTCAGAGACGGGTGGATAGGAGTGGGTATTTGCCTTGCTATTGGATGCTATCTGCTCCAAGAACATATCAGAGCTTCTGGAGGTTTTAGGAATGCTTTCACAAAAGCAAATGGTATTTCAAATACTATTGGTATTGTGCTCTTGTTTGTGTTTCCAGTCTGGGCTTTGATCGGGTTCCTATGA 621 41.06 MGGKNFLRMMTDQTASEAATKMISSDWNELGDATKNLATHVIALGYSGGFITTVLQCFACIAAIYLLVIDRTNWRTKMLTTLLVPYIFLTFPNWLFDTLRGDIGKWITFVGVVLRLFFPEYFKEYMLLPGALILLVVIAPSLIAYYVRDGWIGVGICLAIGCYLLQEHIRASGGFRNAFTKANGISNTIGIVLLFVFPVWALIGFL 206
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01863 206 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 11 202 IPR008892 GO:0016020(InterPro)
Ecan3g01863 206 Pfam Cold acclimation protein WCOR413 16 194 IPR008892 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01863 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:33736304 Ecan3g01863 Ecan-Chr3:29668380 dispersed
Ecan Ecan-Chr2:33736304 Ecan3g01863 Ecan-Chr3:29668380 wgd